Nocardioides marmotae: HPC71_07415
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Entry
HPC71_07415 CDS
T09088
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC71_07415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmar03019
]
HPC71_07415
03016 Transfer RNA biogenesis [BR:
nmar03016
]
HPC71_07415
Enzymes [BR:
nmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPC71_07415
Messenger RNA biogenesis [BR:
nmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPC71_07415
Transfer RNA biogenesis [BR:
nmar03016
]
Prokaryotic type
tRNA degradation factors
HPC71_07415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
PCB_OB
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QKE03419
LinkDB
All DBs
Position
1541678..1543888
Genome browser
AA seq
736 aa
AA seq
DB search
MSAVETVLDNGKFGTRTVKFETGLLARQAAGSVTAYLDDDTMLLSATTAGKHPKDHFDFF
PLTIDVEERMYAAGKIPGSFFRSEGRPGEDAILTCRLIDRPLRPTFKKGLRNEVQVVITV
LALNPDAPYDVLAINAASLSTQLSGLPFSGPVGGVRVALIEGQWVAFPTHSQLEDAVFDM
VVAGRVTSTGDVAIMMVEAEATEQTFAKVQSGVQAPTEEVVAGGLDAAKPFIKQLCEAQA
ELAAAAAKPVQDFPVFLEFEDDVFAAVESAAKADLAAAMKIADKTERNDRTDELKDSVLE
KLAGQFEGREKEIGAAFRALNKQLVRESILRDKVRIDGRGLADIRPLHAEVGVIPRVHGS
ALFERGETQILGVTTLDMLKMEQQLDTLSPEKSRRYMHKYVFPPFSTGETGRVGSPKRRE
VGHGALARRALLPVLPDREEFPYAIRQLSEAMGSNGSTSMGSVCASTLSLLQAGVPLKAS
VAGIAMGLVSGEIDGKTEYVALTDILGSEDAFGDMDFKVAGTREFVTALQLDTKLDGIPA
DVLAAALTQARDARHTILDVMAEAIDAPEEMSPTAPRIITIKIPVDKIGEVIGPKGKVIN
QIQDDTGASISIEDDGTIYIGATNGEAADAARSAINGIANPTMPEVGERYLGTVVKTTNF
GAFVSLLPGKDGLLHISKLRPLAGGKRVEAVEDVLSVGQKIQVEIGEIDDRGKLSLVPVV
EEAEGSTEAAESADSE
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atctccgccgtcgagaccgttctggacaacggcaagttcggcacccgcaccgtcaagttc
gagaccggcctgctggcccgtcaggccgccggctccgtcacggcctacctcgacgacgac
acgatgctgctctcggcgaccaccgccggcaagcaccccaaggaccacttcgacttcttc
cccctgacgatcgacgtcgaggagcggatgtacgccgcgggcaagatccccggctcgttc
ttccgctccgagggccgcccgggcgaggacgcgatcctcacctgccgcctcatcgaccgc
ccgctgcgcccgaccttcaagaagggtctgcgcaacgaggtccaggtcgtcatcaccgtc
ctcgcgctgaaccccgacgcgccgtacgacgtgctcgcgatcaacgccgcctcgctgtcc
acccagctctccggcctgccgttctccggcccggtcggcggcgtccgggtcgccctcatc
gagggtcagtgggtcgccttcccgacgcacagccagctcgaggacgccgtcttcgacatg
gtcgtcgcgggtcgcgtcacctccaccggcgacgtcgcgatcatgatggtcgaggccgag
gccaccgagcagaccttcgccaaggtccagtccggcgtgcaggccccgaccgaggaggtc
gtcgccggcggcctcgacgccgcgaagcccttcatcaagcagctgtgcgaggcgcaggcc
gagctggccgccgccgccgccaagccggtccaggacttcccggtcttcctcgagttcgag
gacgacgtcttcgccgccgtcgagtccgccgccaaggccgacctcgccgccgcgatgaag
atcgccgacaagaccgagcgcaacgaccgcaccgacgagctcaaggactcggtcctggag
aagctcgccggccagttcgagggccgcgagaaggagatcggcgccgccttccgcgcgctg
aacaagcagctggtccgcgagagcatcctgcgcgacaaggtccgcatcgacgggcgcggc
ctggccgacatccgtccgctgcacgccgaggtcggcgtgatcccgcgggtccacggctcg
gcgctgttcgagcgcggcgagacccagatcctgggcgtcaccaccctcgacatgctcaag
atggagcagcagctcgacaccctctccccggagaagtcgcgccgctacatgcacaagtac
gtcttcccgccgttctccaccggcgagaccggtcgcgtcggctcgccgaagcgccgcgag
gtcggccacggtgcgctcgcgcgccgcgcgctgctcccggtgctgccggaccgcgaggag
ttcccctacgccatccgccagctctccgaggccatgggctccaacggctcgacctcgatg
ggctcggtctgcgcctcgaccctctcgctgctgcaggccggtgtgccgctcaaggcgtcg
gtcgccggcatcgcgatgggcctggtctccggtgagatcgacggcaagaccgagtacgtc
gcgctgaccgacatcctcggctccgaggacgccttcggcgacatggacttcaaggtcgcc
ggcacccgcgagttcgtgaccgcgctccagctcgacaccaagctcgacggcatccccgcc
gacgtgctggccgccgcgctgacccaggcccgcgacgcgcgccacaccatcctcgacgtc
atggccgaggccatcgacgcccccgaggagatgtcgcccaccgcgccgcggatcatcacc
atcaagatccccgtggacaagatcggcgaggtcatcggcccgaagggcaaggtgatcaac
cagatccaggacgacaccggcgcctcgatctccatcgaggacgacggcaccatctacatc
ggtgccaccaacggtgaggccgccgacgccgcccgctccgcgatcaacggcatcgccaac
ccgacgatgcccgaggtcggcgagcgctacctcggcacggtcgtgaagacgacgaacttc
ggtgcgttcgtctcgctgctgcccggcaaggacggcctgctgcacatcagcaagctgcgc
ccgctcgccggtggcaagcgcgtcgaggccgtcgaggacgtcctctcggtcggccagaag
atccaggtcgagatcggcgagatcgacgaccgcggcaagctctccctcgtccccgtggtc
gaggaggccgaggggagcacggaggctgcggagtccgccgactccgagtga
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