Nocardioides marmotae: HPC71_07675
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Entry
HPC71_07675 CDS
T09088
Name
(GenBank) DEDD exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03030
DNA replication
nmar03430
Mismatch repair
nmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPC71_07675
03430 Mismatch repair
HPC71_07675
03440 Homologous recombination
HPC71_07675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmar03032
]
HPC71_07675
03400 DNA repair and recombination proteins [BR:
nmar03400
]
HPC71_07675
Enzymes [BR:
nmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPC71_07675
DNA replication proteins [BR:
nmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPC71_07675
DNA repair and recombination proteins [BR:
nmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPC71_07675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
UVR
RNase_H_2
DEDDh_C
XdhC_C
TMV_coat
Motif
Other DBs
NCBI-ProteinID:
QKE00961
LinkDB
All DBs
Position
complement(1586436..1588244)
Genome browser
AA seq
602 aa
AA seq
DB search
MSSTLHAEQPGTSSRGTPDRWESQRSFDELGRPLRDITFTVVDLETTGGSAEGGSMITEI
GAVKVRGGEVLGEFQTLVDPRQPIPPFIAVLTGISNAMVADAPPVESALPAFLEFAAGTV
LVAHNAPFDIGFLKYFCEQQGRPWPTFEVLDTARLARRVITKDDAPNCKLSSLARAFGST
TTPNHRALSDARATVDVLHGLMERLGGLGVHTLEELQTFSGRVSTAQRRKRHLAEGLPHA
PGVYLFRDHERRVLYVGTSKDLRTRVRTYFTASETRSRMGEMVGIADSVTGIECATPLEA
EVRELRLIAEHKPRYNRRSRFPEKTTFIKLTREPWPRLSLVKRVLDDDADYLGPFSSRKV
AEKCLAALHDTFPLRQCSDRFGKTPSRTPCVLAELGRCLAPCDGTVDHDTYAAVVRQLRD
SLLHRPDRVVEQINARMEALAADERFEEAGVHRDRLAAFIRAASRTQRLSALTRCPEVVA
ARRGDDGRWAVHVVRHGRLAAAGVIPPGTDAHTYVASLRASAETVAGGPGPVPVATAEET
EKILRWLESPGIRLVDVEGEWVCPVDGATRHLALHDAVARSRTELVPFDDRRDLTPVHQP
AR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaccctccacgccgagcagccgggcaccagctcccgagggacaccggaccgg
tgggagtcgcagcgcagcttcgacgagctggggcgcccgctgcgcgacatcaccttcacc
gtggtcgacctcgagaccaccggcggctcggccgagggcggctcgatgatcaccgagatc
ggcgcggtcaaggtccgcggcggcgaggtgctcggggagttccagaccctggtcgacccg
cggcagcccatcccgccgttcatcgcggtcctcaccggcatcagcaacgcgatggtcgcc
gacgcgccgccggtcgagtcggcgctgcccgcgttcctggagttcgcggccgggacggtc
ctggtcgcccacaacgcgccgttcgacatcgggttcctcaagtacttctgcgagcagcag
gggcgcccgtggcccaccttcgaggtgctggacaccgcccggctggcgcgccgggtcatc
accaaggacgacgccccgaactgcaagctgtcctccctggcgcgggccttcggctcgacc
accacccccaaccaccgcgccctctccgacgcccgggcgaccgtcgacgtcctgcacggg
ctgatggagcggctcggcgggctcggcgtgcacaccctcgaggagctgcagaccttctcc
ggccgggtcagcaccgcccagcgccgcaagcgccacctcgccgagggtctcccccacgcc
ccgggcgtctacctcttccgcgaccacgagcgccgggtgctctacgtcggcacgtcgaag
gacctgcggacccgcgtccgcacctacttcaccgcctccgagacccggtcccggatgggc
gagatggtcgggatcgccgacagcgtcaccggcatcgagtgcgccacgcccctggaggcg
gaggtccgcgagctccggctgatcgccgagcacaagccgcgctacaaccgccgctcccgc
ttccccgagaagaccaccttcatcaagctgacccgcgagccgtggccgcgtctctccctg
gtcaagcgggtcctcgacgacgacgccgactacctcgggccgttctcctcccgcaaggtc
gcggagaagtgcctggccgccctccacgacaccttccccctgcggcagtgctcggaccgg
ttcggcaagacgccctcccgcaccccctgcgtcctcgccgagctcggccggtgcctggcc
ccgtgcgacggcaccgtggaccacgacacgtacgccgcggtcgtgcggcagctgcgcgac
tcgctgctgcaccgccccgaccgcgtcgtcgagcagatcaacgcccggatggaggcgctc
gccgccgacgagcgcttcgaggaggccggcgtccaccgcgaccgcctggccgccttcatc
cgcgccgccagccggacgcaacggctcagcgccctgacccgctgccccgaggtcgtcgcg
gcccgccggggcgacgacgggcggtgggcggtgcacgtcgtgcggcacggccggctcgcc
gccgccggggtcatcccgccgggcacggacgcccacacctacgtcgcctcgctgcgggcc
tccgccgagaccgtcgccggcggcccggggccggtgccggtggcgacggccgaggagacc
gagaagatcctgcgctggctggagtcccccggcatccggctggtcgacgtcgagggcgag
tgggtctgcccggtcgacggcgccacccggcacctcgccctccacgacgcggtggcccgc
tcgcggaccgagctggtccccttcgacgaccggcgcgacctcacccccgtccaccagccc
gcccgctga
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