Nocardioides marmotae: HPC71_07875
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Entry
HPC71_07875 CDS
T09088
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPC71_07875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmar03400
]
HPC71_07875
Enzymes [BR:
nmar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
HPC71_07875
DNA repair and recombination proteins [BR:
nmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HPC71_07875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
QKE00997
LinkDB
All DBs
Position
complement(1629615..1630517)
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AA seq
300 aa
AA seq
DB search
MLDPDQIALRNPVGTHVTVGKGLVTGALASADSLGCETFQVFCGNPRGWALTAGKPAEDA
AFRAEVGRRGTRVFVHAPYLVNLGSPTPLTYERSVASVAHNLRRAAEIGAEGLVVHTGSY
VAPDDTTERYDAALRQVREGLLPLLETLDAAGDDAPWLLLEPTAGQGRSLCAGVDDLAPY
LAALDHHPRVGVCLDTCHVFAAGAPLDEPGGAAATLDRLEEVAGPGRLRLVHANDSMDVR
GAFKDRHQSIGDGHIGAEPFLELFAHPATAGVPFIAETPGSREVGGDVQVLQELRAKALG
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaccccgatcagatcgcgctgcgcaaccccgtcggcacccacgtcacggtcggc
aagggcctcgtgaccggggcgctcgcctcggccgattcgctcggctgcgagaccttccag
gtcttctgcggcaacccccgcgggtgggcgctcaccgccggcaagcccgccgaggacgcc
gccttccgtgccgaggtcggacgacgcggcacccgggtgttcgtgcacgcgccgtacctg
gtcaacctcggctcccccacgccgctgacctacgagcgctcggtcgccagcgtcgcgcac
aacctgcgccgcgccgccgagatcggcgccgagggcctggtcgtgcacaccggctcctac
gtcgcgcccgacgacaccaccgagcggtacgacgccgcgctgcgccaggtccgcgagggg
ctgctgcccctgctggagaccctcgacgcggccggcgacgacgcgccctggctgctgctc
gagccgaccgccggccagggccgctcgctgtgcgcgggcgtcgacgacctcgcgccgtac
ctcgccgcgctcgaccaccacccccgcgtcggcgtgtgcctggacacctgccacgtcttc
gccgcgggcgcgccgctcgacgagcccggcggcgccgcggccaccctggaccggctcgag
gaggtcgccggccccggccggctgcggctcgtgcacgccaacgactcgatggacgtccgc
ggcgcgttcaaggaccgccaccagagcatcggcgacggtcacatcggcgccgagccgttc
ctcgagctgttcgcccacccggccaccgcgggcgtgccgttcatcgccgagaccccgggc
tcgcgggaggtcggcggcgacgtgcaggtgctccaggagctccgcgcgaaggcgctgggg
tga
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