Nocardioides marmotae: HPC71_10700
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Entry
HPC71_10700 CDS
T09088
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
nmar
Nocardioides marmotae
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmar03019
]
HPC71_10700
Enzymes [BR:
nmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HPC71_10700
Messenger RNA biogenesis [BR:
nmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HPC71_10700
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
AAA_22
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
QKE01491
LinkDB
All DBs
Position
2206018..2208813
Genome browser
AA seq
931 aa
AA seq
DB search
MSAAEEPETDQLSPAQRYASYRATKQHPVLKDFRALHDFPLDDFQVRACEHIEEGRGVLV
AAPTGSGKTIVGEFAIHLALASGRKAFYTTPIKALSNQKYNDLVRRYGPEQVGLLTGDNV
INGEAPIVVMTTEVLRNMLYAGSRTLIGLGYVVMDEVHYLADRSRGAVWEEVIIHLPESV
SLISLSATVSNAEEFGEWLETVRGDTATIVEEKRPVPLYQHVMVGRRLLDLFASSDVDAA
AGFVKEGAPVNDELMKVARDDWAASRIKDRRSARGSGARGARQVGNGRRVWIPSRYDVID
RLERENLLPAIVFIFSRIGCDAAVTQCLNAGVRLTTPAERDEIVAYVEESTRHLAKEDLH
VLGYHDFLEGLSRGVAAHHAGMLPAFKQCVEELFLRGLCKVVFATETLALGINMPARTVV
IEKLSKWNGETHADITPGEYTQLTGRAGRRGLDVEGHGVVMWQPGMNPRELAGLASTRTY
PLRSSFRPSYNMAVNLVSQFGRARSRELLEQSFAQFQADKAVVGLARQLRKSEDALEGYR
EAAQCHLGDFMEYAALRRRISEVEKETSRARRQDRRDEVIASLARLKVGDVIDVPSGKFA
GYAVVVDPGYSDEGPRPYVVTLDRQARRLAMIDFQTPVEALTRLRVPRSFNGRNPQMRRD
LASALRDRTRDLPPAPVRRRKGAPDADVDPEVAELRHRLKDHPCHACPEREDHSRWAERY
FKLERDAATLARRVEQRTNTVARQFDRVCDVLSVLDYLDGESVTDRGRHLMRLYSDMDLL
AAECMRHGLWDDLTPSELAAVLSVLVFEARRADDQSSPRIPGGRVRGVVEEMGRLWADLD
RLEKENRLDFLRQPDLGFAWMAYRWAEGDELDDVLGATELAAGDFVRWMKQLLDLAGQVA
DAAGDSPLRGTARDVVKRLRRGVVAYSGLAD
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgccgaggagcccgagaccgaccagctcagcccggcgcagcgctacgcgtcg
taccgcgccaccaagcagcacccggtgctcaaggacttccgggcgctgcacgacttcccg
ctcgacgacttccaggtccgcgcctgcgagcacatcgaggagggccgcggggtgctcgtc
gcggcgccgaccggctcgggcaagacgatcgtcggcgagttcgcgatccacctcgcgctg
gccagcggccgcaaggcgttctacaccacgccgatcaaggcgctgtcgaaccagaagtac
aacgacctggtccgccgctacggccccgagcaggtcggcctgctgaccggtgacaacgtc
atcaacggcgaggcgccgatcgtggtgatgaccaccgaggtgctgcgcaacatgctctac
gccggctcgcgcacgctgatcgggctcggctacgtcgtcatggacgaggtccactacctc
gccgaccgctcgcgcggcgcggtgtgggaggaggtcatcatccacctccccgagtcggtc
tcgctgatctcgctgtcggccacggtgtccaacgccgaggagttcggcgagtggctggag
accgtgcgcggcgacacggccacgatcgtggaggagaagcggccggtgccgctctaccag
cacgtcatggtcgggcgccggctgctcgacctcttcgcctcctccgacgtcgacgccgcc
gccgggttcgtcaaggagggcgcccccgtcaacgacgagctgatgaaggtcgcccgcgac
gactgggccgcctcccggatcaaggaccgccgctcggcgcgcgggtccggcgcgcggggc
gcacggcaggtcggcaacggtcgccgggtctggatcccgagccggtacgacgtcatcgac
cgcctcgagcgggagaacctgctcccggccatcgtgttcatcttcagccggatcggctgc
gacgccgcggtcacccagtgcctcaacgccggcgtccggctcaccacccccgccgagcgc
gacgagatcgtcgcctacgtcgaggagtcgacccggcacctggccaaggaggacctccac
gtcctgggctaccacgacttcctcgaggggctctcccgtggcgtcgccgcccaccacgcc
gggatgctgccggcgttcaagcagtgcgtggaggagctgttcctgcgcgggctgtgcaag
gtcgtcttcgccaccgagaccctcgcgctgggcatcaacatgcccgcgcggacggtggtc
atcgagaagctcagcaagtggaacggcgagacccacgccgacatcaccccgggggagtac
acccagctcaccggccgcgccggccgccgcggcctcgacgtcgagggccacggggtggtc
atgtggcagccgggcatgaacccgcgcgagctcgccggcctcgcctcgacccgcacctac
ccgctccgctcgtcgttccggccgtcgtacaacatggcggtcaacctggtcagccagttc
ggccgggcgcgctcgcgcgagctgctcgagcagtccttcgcccagttccaggccgacaag
gccgtcgtcgggctcgcccgccagctgcgcaagagcgaggacgcgctcgagggctaccgc
gaggccgcgcagtgccacctcggggacttcatggagtacgccgcgctgcgccgccggatc
tcggaggtggagaaggagaccagccgggcgcgccggcaggaccgtcgcgacgaggtgatc
gcctcgctggcccggctcaaggtcggcgacgtcatcgacgtgccgtcggggaagttcgcc
gggtacgccgtggtcgtcgaccccggctacagcgacgagggcccgcggccgtacgtcgtc
acgctggaccggcaggcgcgccggctcgcgatgatcgacttccagacccctgtggaggcg
ctgacccggctgcgggtgccgcggagcttcaacggccggaacccgcagatgcggcgcgac
ctcgcctcggcgctgcgcgatcgcacccgcgacctgccgccggcgccggtccgccggcgc
aagggcgcgcccgacgccgacgtggaccccgaggtcgccgagctgcgccaccggctcaag
gaccacccctgccacgcctgcccggagcgggaggaccacagccggtgggccgagcgctac
ttcaagctcgagcgggacgccgcgacgctcgcgaggcgggtcgagcagcggaccaacacc
gtggcccgtcagttcgaccgggtctgcgacgtgctcagcgtcctggactacctcgacggc
gagtccgtcaccgaccgcggccgacacctcatgcggctctactccgacatggacctgctc
gccgccgagtgcatgcggcacggcctgtgggacgacctgacgccgtcggagctggcggcc
gtcctctcggtgctggtcttcgaggcccgccgcgccgacgaccagtcctccccgcggatc
ccgggcggtcgtgtgcgcggcgtcgtggaggagatggggcggctgtgggccgacctcgac
cggctcgagaaggagaaccggctcgacttcctccgccagcccgacctcggcttcgcctgg
atggcctaccggtgggccgagggtgacgagctcgacgacgtgctcggcgccaccgagctc
gccgccggcgacttcgtgcgctggatgaagcagctgctcgacctcgccggccaggtcgcc
gacgccgccggcgactcgccgctgcgcggcaccgcccgcgacgtggtcaagcgactgcgc
cgcggcgtcgtcgcgtactccggtctcgccgactga
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