Nocardioides marmotae: HPC71_15020
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Entry
HPC71_15020 CDS
T09088
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nmar
Nocardioides marmotae
Pathway
nmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC71_15020 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmar03021
]
HPC71_15020 (rho)
03019 Messenger RNA biogenesis [BR:
nmar03019
]
HPC71_15020 (rho)
Transcription machinery [BR:
nmar03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPC71_15020 (rho)
Messenger RNA biogenesis [BR:
nmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPC71_15020 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QKE03577
LinkDB
All DBs
Position
complement(3151200..3153194)
Genome browser
AA seq
664 aa
AA seq
DB search
MLIADLRSMAGGMGIADAGTMKKAQLVEAIKAAQTGGRPAPARAAEPETTQVAPPVADDA
PVERTTRRRAAKRAQGAPEAAAEQPAEQPAQQPAQQPERQDRPAQVAAEAQPELPVAQAE
PAAQSEQSERTAAQDGERRRERNQDRQQDRQQRQGRNRQDGQQDKQDGSKQDGQKQQQDK
QQDGQKQNRDRDRDREREQNRERDREQNRERDREQNREREQNREREREQNRERERERDRD
RDQNRDRDQHDDDLDGSGRSRRRRGRDRDRPRGQRNEPDTTILEDDVLVPAAGILDVLDN
YAFVRTSGYLPGPDDVYLSLSMVRKFGLRRGDAIVGQVRQPREGERREKFNPMVRVDSVN
GADPEVGKNRVEFAKLTPVHPTERLRMETGSGNMTGRVIDLVAPIGKGQRGLVVSPSKAG
KTMALQSIASSITTNNPECHLMVVLVDERPEEVTDFERSVKGEVIASTFDRPPADHTMVA
ELAIERAKRLVELGHDVVVLLDGLTRLGRAYNLSAPASGRILSGGVDSAALHPPKRFFGA
ARNIENGGSLTILATALVESGSKTDEVIFEEFTGTGNMELRLRRDLADQRLFPAIDVLAS
GTRREDLLLSSEELAIIAKLRRVMSNVESPEALELLLERLRSSKTNIEFLMQVQRTTPAA
SAEG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcgccgacctccgctccatggcgggcgggatgggcatcgccgatgcgggcacg
atgaagaaggcccagctcgtcgaggcgatcaaggccgcccagaccggtgggcgccctgcc
ccggcgcgggccgccgagccggagaccacgcaggtggcgccgccggtcgcggacgacgcg
ccggtggagcgtacgacgcgtcgccgcgccgcgaagcgggcccagggcgcgcccgaggcg
gccgccgagcagcccgccgagcagcccgcccagcagcccgcccagcagccggagcggcag
gaccggccggcacaggtcgccgccgaggcgcagcccgagctgccggtcgcgcaggccgag
ccggccgcgcagtccgagcagtccgagcggaccgctgcccaggacggcgagcgccgtcgg
gagcgcaaccaggaccgccagcaggaccgccagcagcgccagggccgcaaccgccaggac
ggccagcaggacaagcaggacggctccaagcaggacggccagaagcagcagcaggacaag
cagcaggacggccagaagcagaaccgcgaccgcgaccgcgaccgcgagcgggagcagaac
cgcgagcgtgaccgtgagcagaaccgcgagcgtgaccgcgagcagaaccgcgagcgggag
cagaaccgcgagcgcgagcgggagcagaaccgcgagcgcgagcgcgagcgggaccgcgac
cgcgaccagaaccgggaccgcgaccagcacgacgacgacctcgacggctccggccgcagc
cgccgtcgccgcggccgggaccgcgaccgcccccgcggccagcgcaacgagcccgacacc
acgatcctcgaggacgacgtcctcgtgccggcggcgggcatcctcgacgtcctcgacaac
tacgcgttcgtgcggaccagcggctacctgcccggccccgacgacgtctacctgtcgctg
tcgatggtgcggaagttcggcctgcggcgcggcgacgcgatcgtcggccaggtgcgccag
ccccgcgagggggagcgccgcgagaagttcaacccgatggtgcgggtcgacagcgtcaac
ggcgccgaccccgaggtcgggaagaaccgcgtcgagttcgccaagctcaccccggtccac
ccgaccgagcggctgcgcatggagaccggctcggggaacatgaccggccgggtcatcgac
ctcgtcgcgccgatcggcaagggccagcgcggcctggtcgtctcgccctcgaaggccggc
aagacgatggcgctccagtcgatcgcgagctcgatcaccaccaacaaccccgagtgccac
ctgatggtcgtgctggtcgacgagcggcccgaggaggtcaccgacttcgagcgctcggtc
aagggcgaggtcatcgcctcgaccttcgaccggccgccggccgaccacacgatggtcgcg
gagctggcgatcgagcgcgccaagcgcctggtcgagctcggtcacgacgtggtggtgctg
ctcgacggcctcacccgcctgggccgcgcctacaacctctccgcccccgcgagcggccgg
atcctctccggaggcgtcgactcggccgcgctccacccgcccaagcgtttcttcggcgcg
gcgcgcaacatcgagaacggcggctcgctgaccatcctcgccacggcgctggtcgagagc
ggctcgaagaccgacgaggtcatcttcgaggagttcaccggcaccgggaacatggagctc
cgcctgcggcgcgacctcgccgaccagcggctcttcccggccatcgacgtcctcgcgtcc
ggcacgcggcgcgaggacctgctgctctcctccgaggagctcgcgatcatcgcgaagctg
cgccgggtgatgtcgaacgtcgagagcccggaggcgctggagctgctcctggagcggttg
cggtcctcgaagaccaacatcgagttcctcatgcaggtgcagcggaccacgcctgctgcg
agcgccgagggctga
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integrated database retrieval system
