Nocardioides marmotae: HPC71_20430
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Entry
HPC71_20430 CDS
T09088
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC71_20430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmar03019
]
HPC71_20430
03009 Ribosome biogenesis [BR:
nmar03009
]
HPC71_20430
Enzymes [BR:
nmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPC71_20430
Messenger RNA biogenesis [BR:
nmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPC71_20430
Ribosome biogenesis [BR:
nmar03009
]
Prokaryotic type
rRNA helicases
HPC71_20430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
adh_short
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKE03711
LinkDB
All DBs
Position
complement(4304888..4306576)
Genome browser
AA seq
562 aa
AA seq
DB search
MTTFADLGLDDAVLRALKDVGYETPSPIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPI
LSKLDLKQKTPQALVLAPTRELALQVCEAFERYAAHRKGVHVLPVYGGQAYGVQLSALRR
GVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILSSTPEDKNVA
LFSATMPAQIRRLSKSYLRDPQEITVKASSTTAANITQRYLLVSYPQKVDALTRILEVEN
FEGMIVFVRTKHETETLAEKLRARGFSAAAINGDVAQAVRERTVNQLKSGKLDILVATDV
AARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRTGDAISFVTPRERYLLKHIEKAT
KQPLTQMPLPNVDDVNATRLSRFDDAITAALGQTDRIDKFRDIIGHYVQEYDVPEVDVAA
ALAVVAQGDTPLLLDPAAEARAPRMDDRPDRKDRGDRPERGERRPRGRTDVPMATYRIAV
GKRHKVEPRQIVGAIANEGGLQRGDFGHIQIRPDFSLVELPANLPPTVFQKLEETRISGK
LIELQPDGGSSRPAARKPRHKD
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccttcgcagacctgggcctcgacgacgccgtgctgcgcgcgctcaaggacgtc
ggctacgagacgccgtcgcccatccaggccgccacgatcccgccgctgctcgccggccgc
gacgtcgtcggcctggcgcagaccggcaccggcaagaccgccgcgttcgcgctgcccatc
ctcagcaagctggacctgaagcagaagacgccgcaggcgctcgtcctggcccccacccgt
gagctcgcgctccaggtgtgcgaggcgttcgagcggtacgccgcgcaccgcaagggcgtc
cacgtcctgcccgtctacggcggccaggcctacggcgtacagctctccgccctgcgtcgc
ggcgtccacgtcgtcgtcggcaccccgggccggatcatggaccacctcgagaagggcacc
ctcgacctctccgagctgcgcttcctcgtgctcgacgaggccgacgagatgctcaacatg
ggcttcgccgaggacgtcgagacgatcctctcgagcacgccggaggacaagaacgtcgcg
ctgttctccgcgacgatgcccgcgcagatccgccggctctccaagagctacctgcgcgac
ccgcaggagatcaccgtcaaggcgagctccacgacggccgcgaacatcacccagcgctac
ctgctggtcagctacccgcagaaggtcgacgcgctcacgcgcatcctcgaggtcgagaac
ttcgaggggatgatcgtcttcgtccgcaccaagcacgagaccgagacgctcgccgagaag
ctgcgcgcccgcgggttctccgccgccgccatcaacggcgacgtcgcccaggcggtccgc
gagcggactgtcaaccagctgaagtcgggcaagctcgacatcctcgtcgccaccgacgtc
gccgcccgcggcctcgacgtcgagcggatcagccacgtcgtcaactacgacatccccacc
gacaccgagtcctacgtccaccgcatcggccgcaccggccgcgcgggccggaccggcgac
gcgatctccttcgtcaccccgcgcgagcgctacctgctcaagcacatcgagaaggccacc
aagcagccgctcacccagatgccgctgccgaacgtcgacgacgtcaacgccacccggctc
tcccgcttcgacgacgcgatcaccgccgcgctcggccagaccgaccggatcgacaagttc
cgcgacatcatcggccactacgtccaggagtacgacgtccccgaggtcgacgtggccgcc
gcgctcgccgtcgtggcccagggcgacaccccgctgctgctcgacccggccgccgaggcc
cgcgcgccgcgcatggacgaccgccccgaccgcaaggaccgcggcgaccggcccgagcgg
ggcgagcgccgcccgcgcggccgcaccgacgtcccgatggcgacgtaccggatcgccgtg
ggcaagcggcacaaggtcgagccgcgccagatcgtcggcgcgatcgccaacgagggcggc
ctccagcgcggggacttcgggcacatccagatccgcccggacttctccctcgtcgagctg
cccgcgaacctgccgccgacggtgttccagaagctcgaggagacccggatctccggcaag
ctcatcgagctccagcccgacggtggctcgagccgcccggcggcccgcaagccccgccac
aaggactga
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