Nesoenas mayeri (pink pigeon): 308052385
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Entry
308052385 CDS
T11968
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
nmay Nesoenas mayeri (pink pigeon)
Pathway
nmay04382
Cornified envelope formation
nmay04510
Focal adhesion
nmay04512
ECM-receptor interaction
nmay04518
Integrin signaling
nmay04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nmay00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
308052385 (COL4A1)
04518 Integrin signaling
308052385 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
308052385 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
308052385 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
308052385 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nmay04147
]
308052385 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
nmay00536
]
308052385 (COL4A1)
Exosome [BR:
nmay04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
308052385 (COL4A1)
Glycosaminoglycan binding proteins [BR:
nmay00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308052385 (COL4A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
308052385
NCBI-ProteinID:
XP_080219316
LinkDB
All DBs
Position
1:<152655950..>152788436
Genome browser
AA seq
1666 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGAPGLKGDTGEPGLPGTKGTRGPPGASGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGEVIGLLPPSLLKGDKGFPGQPGLPGPPGSP
GFQGTMGPQGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPSPHMK
EKGSEIIKGEKGDPGEKGERGTPGFPGAGFKGDKGEPGKPGPRGKPGKDGDPGPKGEAGL
PGGFGIPGRPGEPGAKGDKGERGFPGPPGRFIDPGPVGEKGEPGASGLPGLKGQKGEKGF
PGIQGIPGPPGRPLPDRVGSPGVPGERGEKGEKGSPGFALPGPPGRDGFPGPPGLPGPPG
PPGKTDGIDQCQQGEPGAPGTPGLPGRDGFPGEMGEKGDKGESCALCDKVGPPGLPGPQG
PPGPAGFPGQSGFKGDRGSPGLDGLPGVPGPPGTPGLMGSPGAKGEPGDFSYDSILKGEK
GDPGFPGQPGTPGREGRPGKDGLPGLQGPKGAAGTAGLKGERGPPGQPGFPGVRGERGFP
GPPGIGTAGLPGDKGDRGFAGTPGLPGLPGAKGEAGRTVPLPGPPGADGLPGPPGFPGPQ
GDKGYPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGLPGTPGTPGLDGLPG
VPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGIPGQQGFRGD
PGLPGLQGLQGPPGAPGLGPQGSPGPTGQPGPQGPPGFPGIKGERGFPGIPGLDMPGPKG
DKGSQGQPGVPGSVGLPGLPGPQGDVGLKGSAGAKGEMGVMGTPGLPGTPGPVGDRGLPG
EKGSQGFKGVVGPQGDPGVKGDKGEAGLPGKPGTMDNMDMVSLKGQKGDQGEKGDHGATG
EKGLQGEYGDPGIPGKDGEPGTPGHPGPKGDQGPPGYPGDPGLPGQKGSVGEMGLPGTPG
EKGLPGVPGSPGTPGFPGQKGEKGDKGAPGFPGIGFPGSPGEKGEPGRTGSPGLAGDKGE
KGSAGMPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGIPGP
AGSIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGVKGEVGFPGSPGSPGIP
GLKGEPGYAGPPGPKGSQGLPGLPGSAMEGPKGDRGPQGQPGHPGLPGPTGPPGPPGVKG
AKGEQGSDGWPGTPGSPGVKGDPGFQGLPGSPGLPGDIGQKGDLGPPGVPGVPGPKGSPG
FPGLKGERGDQGLPGSKGLQGPPGPPGAFQLVKGDPGLPGPVGPVGLKGFPGLPGPKGQQ
GVTGPAGVPGPPGSPGFDGQPGQKGEIGPYGPPGPRGFPGPPGPEGLPGAMGPPGAPSVA
HGFLVTRHSQTTEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFL
FCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRSFISRCSVCEAPAMVIAVHSQ
TIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCN
YYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtctgcc
gcgggttgttccggttgtggaaaatgtgactgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggactacagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctggggcaccaggtcttaagggtgatactggagaaccaggactaccaggaacaaag
ggaacaagaggccccccaggagcatcaggctttccaggaaacccaggccttcctggaatt
cctggacaagatggccctcctggtccacctggcattccaggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccgggtttaccaggattgactgggagcataggaccccca
ggacctcctggaatgaagggagatccgggtgaagtgatcggtcttttacctcctagtttg
ctaaaaggtgataaaggctttcctggccaacctggactacctggcccacctggaagtcca
ggatttcagggaacaatggggccacaagggcctccaggagaaccaggtcccccgggtcca
ccaggactcccaggcgagaagggctatatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggagtaaggggtccaccaggcccaccaggcccgtcaccccacatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggtgatccaggtgaaaagggtgaacgg
ggaaccccaggatttccaggtgctggtttcaaaggagataagggtgaacctgggaagcct
ggtccacgtggaaagcctggaaaagatggtgacccaggaccaaaaggagaagccggttta
cctggtgggtttgggattccaggacgacctggggagcctggtgcaaaaggtgacaaaggt
gaacgaggttttccaggacctccaggaagattcatagatcctggaccagtaggtgaaaaa
ggagagcctggagcttcaggtttgcctggactaaaaggacaaaaaggtgaaaaaggtttc
cctggaatacaaggaatcccaggacctccaggtcgaccacttccagacagggtaggatca
ccgggtgttcctggagagaggggtgaaaaaggtgaaaagggttctccgggattcgcttta
cctggaccccctggaagagatggtttcccaggtcccccggggttgcctggcccaccaggt
cctccaggcaaaacagacggaatcgatcaatgccagcaaggagaacctggtgcaccaggt
actcctggacttccaggaagagatggatttccaggagagatgggagagaaaggtgacaaa
ggtgaatcttgtgccttatgtgataaagtaggacctcctggacttccaggaccacaaggg
ccaccaggtccagcaggttttccaggacaatcaggtttcaagggtgacagaggctcacct
ggacttgatggccttccaggggtacctgggccccccggcactccaggacttatgggcagc
cctggggcaaaaggagaaccaggagatttttcttatgattctatcctgaaaggtgaaaag
ggagatcctggtttcccaggacaaccaggtactcctggaagagaaggcagaccagggaaa
gatggattgccaggtctccagggtccgaaaggagcagcgggtacagctggcttgaaagga
gaacgtggtccccctggccaacctggattccctggagtacgtggtgaaagaggttttcct
ggccctcctgggataggcactgcagggttacctggtgacaaaggagacagaggctttgct
ggaaccccaggtttaccaggccttccaggagcaaagggtgaagcaggacgaactgtacca
ctccctggacctcctggggcggatggtctccctgggccacctggtttccctggaccccaa
ggtgacaaagggtatcctgggcttccaggtagacccggcctacctggagaaaaaggtgct
gttgggcagccaggtatagggttccctggacctccaggacccaaaggtttccaaggtcag
cctggctcgcctggtctgccggggactccaggaacccctggcctggatggtttgccaggt
gtaccaggtttacaaggtcaaaaaggtgaacctggtgtgggtctccctggcccaaagggg
ttgccaggccccccaggcccagctggcatccctggagaaaaggggagtccaggactgcct
ggcttacgtggcgagcaaggcttcccgggcatacctgggcagcaaggattcagaggtgac
cctggtctcccaggactgcagggcttgcagggccccccaggcgcaccagggctgggcccc
cagggatcaccaggacctaccgggcagccaggacctcagggaccgccaggatttcctgga
ataaaaggagaaaggggcttccctggtatcccaggtctagatatgccaggaccaaaaggg
gataaaggtagccagggccagcctggagtaccagggtctgtggggttacctggcctgccg
ggtccacagggggacgttggactgaaaggatcggcaggagccaaaggagaaatgggagtt
atgggaactcctgggttgccaggaactcctggaccagttggagatcgagggttgcctggt
gaaaaaggtagccaaggtttcaaaggtgtagttggaccacaaggtgatcctggtgtcaaa
ggagataaaggtgaagccggtctcccaggaaaacctggaacgatggacaacatggacatg
gttagtctcaaaggccaaaagggagatcaaggagaaaaaggggaccatggagcaacagga
gaaaaagggttacaaggggaatatggagacccaggaattccaggaaaggatggtgaacct
ggtactccaggacatccaggaccaaaaggtgatcagggccccccagggtacccaggggat
ccaggacttccaggacaaaaaggatcagttggtgaaatgggtttgccaggaacacccgga
gaaaagggtctcccaggagtgccaggttcaccaggcacaccagggttccctgggcaaaaa
ggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttccagggtctcct
ggtgagaagggagaaccaggaagaacaggtagtccaggcttggctggcgataaaggtgaa
aagggtagtgcaggaatgcctggaatgccgggtgccccaggtcccaaaggatcccctggc
atggcgggatttccagggagccctggccgccatggagaaaagggtgaaaaaggacttcct
ggcttaagtggcattccaggcttaaaaggagaaccaggtgaacctggcattccgggtcct
gctggttccattggacagaaaggtgaaccaggttatgatgggattccaggtgcagctggt
gcaaagggtgaacaaggtcttccaggtagagggcttccgggatttcccggtgcaaaggga
gataaaggtgtgaaaggtgaggtgggttttccaggatccccaggaagtccggggatccca
ggcctgaaaggagaaccgggctatgctggtccaccgggccccaagggcagccaagggctt
cctgggctaccaggaagtgcaatggagggccctaaaggagacagaggaccccagggccaa
cctggccatccaggtttaccaggtccgacagggccaccaggacccccaggtgtgaaaggg
gccaaaggagagcaggggagcgatggctggcctgggactcctgggagtccaggagtcaaa
ggtgatccaggtttccagggattgccaggtagtcctggtttaccaggagatattggtcaa
aagggtgatttgggacctccaggagttccaggtgttccagggccaaaaggatctcctggc
ttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaaggtttacaa
ggcccaccaggcccaccaggtgcttttcagcttgttaaaggagatcccggcttacctggc
cctgtaggaccagtgggtctcaaaggattcccaggacttccaggtcccaaagggcagcaa
ggggtgacaggacctgcaggtgtacctggaccacctggtagtccagggtttgatggtcag
cctgggcaaaaaggagaaattggtccttatggtcccccagggcccagaggattccctggt
ccaccaggccctgaaggtttgcctggggctatgggcccaccgggtgctccatctgttgct
catggcttccttgttaccagacacagtcaaaccactgaagaaccatcgtgtccatttgga
acaaggctgatttaccatggctactccttgctttatgtacaaggcaatgaaagagcacat
ggccaagatctgggcacggcaggaagttgtcttcgtaaatttagtaccatgcctttctta
ttctgcaatatcaacaatgtatgtaactttgcatcaaggaatgactattcctactggctg
tccactcctgaacccatgccaatgaatatggctcctatcactggtgataatatcagatcg
ttcatcagcagatgctctgtatgtgaagctcctgctatggtaatagccgttcacagtcaa
acaattcaaataccaccatgtcctgaaggctggagttcactttggattggttactccttt
gtcatgcacaccagcgctggtgcggagggctctggccaggccctggcgtctcccggttcc
tgcctagaggagtttcgcagcgctcccttcattgaatgccatggccggggcacctgcaat
tattatgcaaatgcttacagcttctggcttgccactatagaaaggaatgagatgttcaag
aaaccgactccctcaactctgaaagcaggggatctgcgctcaaatgttagccgttgtcaa
gtctgtatgagaaaaacataa
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