Neisseria meningitidis MC58 (serogroup B): NMB1281
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Entry
NMB1281 CDS
T00027
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nme
Neisseria meningitidis MC58 (serogroup B)
Pathway
nme03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMB1281 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nme03400
]
NMB1281 (mfd)
Enzymes [BR:
nme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMB1281 (mfd)
DNA repair and recombination proteins [BR:
nme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NMB1281 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
ERCC3_RAD25_C
AAA_30
UB2H
HemY_N
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AAF41657
UniProt:
Q9JZ57
LinkDB
All DBs
Position
1295171..1299310
Genome browser
AA seq
1379 aa
AA seq
DB search
MTYPIPKPREKSRWPNLSQGSLPLALARYLPHKRLKVVLTQDAEQALRLQTAWRFFRPHD
TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG
RTFWLKTGQTLDIGRLKSDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF
DDEIDSIKTFDTETQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY
KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLDDVHAEANRFWSDVKSRYAM
AQGDETYPPLLPQYLYLSADVFAGRLKNYGQVLPDVSGKEYTLPDLAVNRQADEPLQALK
DFQTAFDGRILLCAESLGRRETMLGFLQQNGLKAKPVSDWQGFLSAHEPLMITVAPLAYG
FKLGGLQSPNQQQPTPSPVGEGWGEGKAVAAQTEFSAAAINPLPSPLPQEREQSAAAVSD
SLKAAAVSTESSLPLGTSNLHGQIRQQPAPSPVGEGWGEGKAVAAQTEFPASATNPLPSP
LPQEREQSAAAVSDDLKTKSSLHPVANNLHGQIRQQPTPSPVGEGWGEGKAVAAQTEFSA
AATNPLPSPLPQEREQSAAVVSDSLKAAAVSTESSLPPGKSNLHGQIQQQPAPSPVGEGW
GEGKAVAAQSAIAVITESDLYQYVARSRIHNRRKKHAAVSDGLLRDLAEINIGDPVVHEE
HGIGRYMGLVTMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENIALHKLGS
GAWNKAKRKAAEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAA
AIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQ
NFADRFADFPVKVASLSRFNNSKATKAALEGMADGTVDIVIGTHKLVQDDIKFKNLGLVI
IDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVK
TFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRE
RELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSH
HQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQ
VGFTLYTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPEDYCPDIHERLVLYKR
LAVCETVQQINTIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTF
GKNNNVDPTEIILLIQNDKKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCLPK
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgacctaccccatccccaaaccccgtgaaaaatcccgttggcccaatctttcgcaaggc
tcgctgcccttggctttggcgcgttatctgccgcacaagcggctcaaggtcgtgctgacc
caagatgcggaacaggcgttgcgccttcagacggcatggcggtttttccgtccgcacgac
acggcggtgttcctgccggactgggaaacgctgccttacgagcgtttttcgccgcatcag
gatttggtgtcggagcggctgtcggcgttgtggcagattaaaagcggcgcggcggatgtg
ttgttcgtgccggttgccacggcgatgcagaagctgccgcccgtgccgtttctggcaggg
cgcacgttttggctgaaaacggggcagactttggatataggccgtctgaaaagtgatttg
gtggatgcgggctacaaccatgtttcccacgttgtcgcggcgggcgaatttgccgtgcgc
ggcggtatagtcgatttgttcccgatgggcagcgaaatgccgtaccgcatcgatttgttt
gacgatgaaatcgacagcatcaaaaccttcgataccgaaacgcaacgcaccatttccccc
gtttccgaaatccgcctgctgccggcgcacgagttccccaccgacagcgaggcgcaaaaa
atcttccgcagccgcttccgcgaggaagtcgatggtaatccgaacgatgcggctgtgtac
aaagccgtcagcaacggtcatttcggcgcgggcgtggaatactacctgccgctgtttttt
gaaaacgagttggaaacgctgtttgactatatcggcgaagatgcgctgtttgtctcttta
gacgatgttcatgccgaggcaaaccgtttttggagcgatgtcaaatcgcgttacgcgatg
gcgcagggcgacgaaacctatccgcctttgcttccacagtatttgtatctctctgccgat
gtgttcgcaggccgtctgaaaaactacggacaggtgctgcccgatgtttccggcaaggaa
tacaccctgcccgaccttgccgtcaaccgccaagcagatgagccgttgcaggcattgaag
gattttcagacggcgtttgacggacggattttgctgtgcgccgaaagtttgggacggcgc
gaaactatgctcggtttcttgcagcaaaacggtttgaaagccaaacccgtgtccgactgg
cagggctttttatcggcacacgagccgctgatgattacagtggcgccgttggcatacggg
ttcaaactgggcggactgcaatcgccgaaccaacagcaacctactccctcccccgtgggg
gagggttggggagagggcaaagcagttgccgctcaaactgaattttccgcagccgcaata
aaccctctccctagccctctcccacaggagagggaacaaagtgcagccgccgtttcagac
agtctgaaagcagccgccgtttcaaccgaaagcagcctgcccctcggtacaagtaatctg
cacgggcaaatccgacagcaacctgccccttcccccgtgggggagggttggggagagggc
aaagcagttgccgctcaaaccgaatttcccgcatccgcaacaaaccctctccctagccct
ctcccacaggagagggaacaaagtgcagccgccgtttcagacgacctgaaaaccaaaagc
agcctgcatcccgtcgcaaataatctgcacgggcaaatccgacagcaacctactccctcc
cccgtgggggagggttggggagagggcaaagcagttgccgctcaaaccgaattttccgca
gccgcaacaaaccctctccctagccctctcccacaggagagggaacaaagtgcagccgtc
gtttcagacagtctgaaagcagccgccgtttcaaccgaaagcagcctgccccccggtaaa
agtaatctgcacgggcaaatccaacagcaacctgccccctcccccgtgggggagggttgg
ggagagggcaaagcagttgccgctcaaagtgccatcgccgtcatcaccgaatccgatctc
taccaatacgtcgcccgttcgcgcatccacaaccgccgcaagaaacacgccgccgtttca
gacgggctgttgcgcgaccttgccgaaatcaatatcggcgaccccgtcgtgcacgaagaa
cacggcatcgggcggtatatgggcttggtaacgatggacttgggcggcgaaaccaacgaa
atgatgttgctcgaatacgcaggcgaagcgcagctttatgtgcctgtttcgcaactgcat
ttaatcagccgctactccggtcaggcgcatgaaaacattgccctgcacaagctcggcagt
ggcgcgtggaacaaggcgaagcgcaaagccgccgaaaaagcgcgcgacaccgccgccgaa
ttgctcaacctctacgcccaacgcgccgcccaatcgggacacaagtttgaaatcaacgag
ttggactatcaggcgtttgccgacggcttcggctacgaggaaaccgaagaccaggccgcc
gccatcgccgccgtgattaaagatttgacgcaagcgaagccgatggatcgccttgtgtgc
ggcgatgtcggcttcggcaaaaccgaagtcgccctgcgcgccgcgtttgtggcggtgatg
ggcggcaaacaggtcgccgtacttgctccgaccacgcttttggtcgagcagcacgcgcaa
aacttcgccgaccgtttcgccgatttccccgtgaaagtcgccagcctttcgcgtttcaac
aacagcaaagccaccaaagccgcgctggaaggcatggcagacggcacggtcgatattgtt
atcggtacgcacaaactggtgcaggacgacatcaaattcaaaaacttaggtttagtgatt
atcgacgaagaacaccgcttcggcgtgcgtcagaaagagcagctcaaacgcctgcgcgcc
aatgttgatatccttaccatgaccgccacgccgattccgcgtactttaagtatggcgttg
gaaggactgcgcgacttctcgctgattaccaccgcgcccagccgccgcctcgccgtcaaa
acctttgtcaaaccctttagcgaaggcagcgtgcgcgaagccgtgttgcgcgaactcaaa
cgcggaggacaggtatttttcctgcacaatgaagtagatacgattgaaaatatgcgcgag
cggctggaaaccctgctgcccgaagcccgcatcggcgtggcgcacggacaactgcgcgag
cgcgagctggaacaagtcatgcgcgactttttgcagcaacgatttaacgtgttgctctgt
tccaccatcatcgaaaccggtatcgatatccccaacgccaacaccatcatcatcaaccgc
gccgacaaattcggactggcgcaactgcaccagcttcgcgggcgcgtcggccgcagccat
caccaagcctacgcctacctgctcacgcccgaatacatcactaaagacgcagaaaaacgc
ctcgatgccattgcggcggcagacgaactcggcgcaggttttaccctagccatgcaggat
ttggaaatccgtggtgcaggcgaaatccttggcgaaggacaatccggcgaaatgatacag
gtcggcttcacgctctacaccgaaatgctcaaacaagccgttcgcgacctcaaaaaaggc
cgccagcccgacctcgacgcaccgttgggcatcaccaccgaaatcaaactgcacagcccc
gccctgctgcccgaagattactgccccgacatccacgaacggctcgtcctctacaaacgc
ctcgccgtctgcgaaaccgtgcaacaaatcaacaccatacacgaagaactcgtcgaccgc
ttcggcctgcccgaacaacccgtcaaaacccttatcgaaagccaccacttacggcttatg
gcaaaagaattgggtatcgatgccattgatgcggccggcgaagcggtaacggtaaccttt
ggtaaaaacaataatgtcgatccaaccgaaatcatcctgctgattcagaacgacaaaaaa
taccgccttgccggcgccgataagctgcggtttaccgcagagatggaaaatatcgaggtc
agaatcaacaccgtaaaaaacgttttaaaaaccttgcaaaacagatgcctgcccaaataa
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