Nomia melanderi (Alkali bee): 116424294
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Entry
116424294 CDS
T07404
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116424294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116424294
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116424294
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116424294
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_upst_double_PIN
DUF5101
Motif
Other DBs
NCBI-GeneID:
116424294
NCBI-ProteinID:
XP_031826371
LinkDB
All DBs
Position
Unknown
AA seq
2402 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRDSCQEISDLVLWKGLEADRHLLRSLLSCIDFSTG
EPPESSAKDYFQVQLLKQECTNLLSKPSFISNLCFAIDHPFHQQKTLNPSPKFFLRLKKV
LGLTLVQEVAFAIALLHSENSEICALALEHVQKQLPELIKNYINSETSNKHHEEGLHDSL
PEVLHLILSQALYTANQFGLSSEAKEKFLKNLRRDFPRELVPVVLAPLLYPDNGETPQAK
IELNMAVNQLDGNSLVELIMELGYGFTSSVEECRSALAGLGAREISPACAARVLGHMART
CNNLDDAGGLQSFWGNSGATQDANKEKSADNVAPTTWNVEVFIQALKEIQSTLSWNEVIV
KLDHAEFVIKDRQGLSILITGLRLGLQHQGYLPDMFPVELFYRHWDNVEGQFSLVQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEAQTWRSLNVVELLLHMAERGLYGPVQEIFK
WPVQHCPDVLVLALLQINAPITILRQELLSTLMPIFLGNHPNSAVILHHAWHGNSVKIKS
IIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALTHLLTAQSYPFVIDLACLASRREYLKL
EKWLTDKIREQGEVFVTACVKFLQRRCPQVMGPGIKEDLTVPKASQLPQETLTTMLACLQ
VCAGGVSQECSEAIMTMVQNCSLMLSKSTMSRPPPPGVLRHRTLESFNPATLGGPLFSSK
QVDPLGNLSSSLASMSLGSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPILP
VSSQLHSGPVGTQGPSVLPGSTTIGSLGRLGPPTGIEKARIPETSNLFPDMAQNVSKEIE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQY
PDKELQITAQLFGGIVERGLVNSYMTLGLALRFVLDALRKPEGTKMYYFGITALDRFKNR
LKDYQTYCEHVRAIQHFSEFPPHLIEYIEYGLQGQEPPTRPQGPVLPKTLAAMLAPVTTP
YKTITTTTITTSTTQAKSSTTPTTSLSARPSIANATNIDTLLVATDKEEKITTPPEALQD
KTAFIFNNLSQLNMQQKCDEIREIVTEEYWPWMAQYLVMKRASVELGFHALYSNFLECLK
LPEVYKLVTRETFRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNKPILQIDIDV
KGLLVEAYHKGNQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHREHDLKL
NLKFEIEVLCKNLNIDVAELKPALYLTDPEKLRNLESQLSHPNKKAEANNNPQQTQGPIE
ELVGPTTTGTIVPQAPPANTTPSLPTGPPEPRFNYMDISVTSIANIAQHITINNQLPLFQ
THPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHM
VRNLTAGMAMITCRDQVLASISTNLKQAFLTAMLGTTPQQKELAEQAANVVAADNMELAC
AFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQALLMPKPVTEPAVTAFAANPAVAVAAAQQVAAYA
AAVSNDEVGAMLEKLAADVEVLLTAMGPAAPPPQHSALHSLLESIILTRRSRDAGAAMTL
LKKAVEGLLDGPTISSGVIDSEFILRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLTEC
REEFRYNFEAVDYLIRSHLISLPQYDLALAQAIDSGNAMATAFAMQLVQLYLVDERQTTH
VTESDLFHTIEILARMAHHRAPPEGILLFRLTSLIESLRANHDPGVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMFVHQMNMHGILKT
DDLITRFFKLSTQMCVDLCYRALAETNAAPSVVRAKCFHSLDAFVRLVALLVKHSGDSTN
THTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVLEAVNYQV
LTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYL
APFLRNAELAKPVTLLYNGTLRVILVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSA
FPRNMRLPDPFTPNLKVDMLPEIAHAPRVLTNFASMIQPLSFKKELDSYLKARAPVTFLS
ELRSNLQVSQEAGVRYNSQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPTYKFWTHEFVHCAPEMEKLFDSVAKSCMVQQLQPTPEPEIP
KS
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaattta
aataagaaaaattttcgggacagctgccaagaaatatcagatttggtgctgtggaagggt
ctggaggcagacagacacttgctgcgctctttgctctcgtgcatcgatttttcaacagga
gagccaccggaatcaagtgcgaaagattattttcaagtgcaacttctgaagcaagagtgt
actaaccttcttagcaaaccttcttttatttctaatctgtgctttgctatagatcatcca
tttcatcagcaaaagactttgaatccatcgccaaagttttttttacgtttgaaaaaggta
cttggcttaactctggtacaagaagttgcatttgcgattgcgttgctgcattctgagaat
tctgaaatttgtgcattagccctagagcacgtgcaaaagcagctgcctgaattgataaaa
aattatatcaactctgagacaagcaataaacatcacgaggaaggattacacgattcgttg
cctgaagttcttcaccttatattatcacaggctttatatacagccaatcaatttggcctt
tcatcggaagcaaaagaaaaatttctcaagaatttaaggcgcgattttccccgtgagctg
gtaccagtggtgctagcaccactcttgtatccagacaacggggaaactccgcaagccaaa
attgaattaaacatggctgtcaatcaactggatgggaattccctagtagaattgattatg
gaattaggatatggatttactagcagcgttgaagaatgtagatcagccttagctggccta
ggtgctcgagaaatatccccagcatgtgctgctagagtactaggtcatatggcacgtact
tgtaacaaccttgacgatgctggaggtttacaatcattttggggtaattcaggagctaca
caagatgctaacaaagaaaagtctgcagataatgttgctcctactacctggaacgttgaa
gtgtttattcaagctttaaaagaaattcaatccacactgtcttggaatgaagtgatagtt
aaattggatcatgctgaattcgttattaaagacagacaagggttgagtatactaatcact
ggtttaaggttggggttgcaacatcaaggatatctaccagatatgtttcctgtagaactt
ttttatcgtcattgggataatgtagaaggacaattctccttagtacaacaaattttgaaa
tgtccagacatattttgttttgctgattatccatatcactctgtaaccgttgatgtatta
aaagcagcaccggagagcgacagtaaagaagcacaaacatggagatccttgaatgttgtt
gaattactcttacacatggcagaaagagggctatatggaccagttcaagaaatattcaaa
tggcccgttcaacactgccctgatgttcttgtattagcattattgcaaattaatgcgcct
attactatattgagacaagaactacttagtacattgatgcctattttccttggaaatcat
ccgaactctgctgtcattttacatcatgcgtggcatgggaattctgttaaaataaaatct
attatcatgcatgccatggcagaatggtacatacgaggagatcacgaccaaactcgatta
tctcgtattctggatgtcgctcaagacctcaaagcgttaactcatttacttactgctcag
tcatatccgtttgttattgatttggcttgtttggcgtcaagaagagaatatttaaaatta
gaaaaatggttgacagataaaatcagagaacagggagaagtttttgtcaccgcttgtgta
aaatttttacaacggcgttgcccgcaggtgatgggtcctggcataaaagaagaccttaca
gttccaaaagcgagtcagcttcctcaagaaacattgacaactatgcttgcttgtttgcaa
gtgtgtgctggaggtgtttctcaagaatgttcagaagcaataatgactatggtacaaaat
tgcagtcttatgttgagtaagagtacaatgagtagacctccgccaccaggagttctaaga
caccgaacattagaatcttttaatccagctacgttaggggggccgctattttcttcaaaa
caagtagacccacttggaaatttaagctcaagtcttgcgtctatgagtttgggatctagt
cttggtcctccgagcagttctgcattcaatttacctggtgctcttggacctttggtgtct
gcacctggatccccttcccgtctcatgggaccttctccaagtccatttccaattctacca
gtgtcttctcaattacattctggaccagttggaacacaaggaccatctgtccttcctggc
agtacaacaattggaagtttaggtcgccttgggcctccaacaggcattgaaaaggcaaga
atacccgaaacatcgaacttatttcctgacatggcacaaaatgtttccaaagaaattgag
gatgaagcaaatagctactttcaacgtatatacaatcatccgccacaccccactttatca
atcgatgaagttctagatatgttgaaaaaatttcaagattctggtagtaagagagaaagg
gaagtgtttaattgtatgctacgaaacttattcgaagaataccgctttttccctcaatat
cctgataaggagttacaaatcacagcacagttatttggtggaatcgttgagagaggatta
gttaatagctatatgacacttggattggctctgagatttgtgttggatgctcttcggaaa
ccagaaggcaccaagatgtattattttggcataactgctctggatcgtttcaagaatcgt
ttaaaagattaccaaacatattgtgagcacgtcagggcaattcagcatttcagtgagttt
ccaccacatttaattgagtacatagaatatggattacaggggcaggagcctcccacgaga
cctcaaggtccggttctcccaaaaaccttagcagctatgttagcacccgttactacgcca
tataaaactattacaacaacaactataacgaccagtactactcaagcaaaatcatccaca
acgccaaccacgtctctttcagctagaccttccattgctaatgcgacaaatattgataca
ttattagtagcgacagataaagaagaaaaaataacaacaccgcccgaggctttacaagat
aagacggcattcatttttaacaatcttagtcaattaaatatgcaacaaaaatgtgatgaa
atccgagaaattgtcacggaagaatattggccttggatggctcagtatctagtaatgaaa
cgtgctagcgtagaattaggatttcatgctttatattccaactttttggaatgtttaaaa
ttacctgaagtgtataaattggttactagggaaacgtttagaaacataaaggttttattg
agaagtgataaaggaatagcaaatttttctgatcgtacacttctaaaaaatttgggtcat
tggttaggaatgttaactcttggcagaaataaacccattttgcagattgacatagacgtt
aaaggtttacttgttgaagcatatcataaaggcaatcaagagctcctttatgtagttccc
tttgttgccaaagtacttgaaagttgtgcgaagagtcgcgtttttcgtccgcccaatcct
tggacaatggcaatcatgaatgtactggcagaacttcatcgagaacatgatttgaaatta
aacttaaaattcgaaatcgaagtgctttgcaagaatttaaacattgatgttgctgaattg
aaacctgcgttgtacctgacggatccagaaaagttacgaaacttggaatctcaactatca
catccaaataaaaaggcggaagcaaataataatccacaacaaacccaaggtcctatcgaa
gaattggttggtccaactacgaccggaacaattgttccacaagcacctcctgcaaataca
acaccgtctttgcccactggtccaccagaaccacgtttcaactacatggatatatctgta
acgagcattgctaatattgctcaacacattaccatcaataatcagttaccattgtttcaa
acacatccacacttaaaacagtttgttcgtccagctgttgaaagagcaattcaagaatgg
attcaccctgttgttgatcgttcaattaaaatagctttaactactagcgaacaaattgta
agaaaagattttgcattggatccagaggaagttcgaatgagaacagcggctagacacatg
gttaggaacttaactgctggaatggctatgattacttgccgcgatcaggttttagcgtca
attagtacaaatttaaagcaagctttccttaccgcgatgttgggcacaactccgcaacag
aaagaacttgctgaacaagcagctaatgtagtagctgccgacaacatggaacttgcctgt
gcatttgtacaaaagaccgccattgaaaaggctattccagaaatggataagcgtttgctg
aatgaaattgaattacgaaagattgctcgacaagagggaagacgatattgtgatccatta
gccaagtatcaagctgaaagaatgcctgaacaaatcagattaaaggtaggaggagttaca
cctcaacaaatggctgtatacgaagaatttgcgagaaatattccaggatttttgccactt
tccgaacgtgatacacaagctctgttaatgccaaaacctgtcactgaacctgctgtaact
gcatttgccgctaatcccgcggttgcagtagcagcagcgcaacaagttgctgcgtatgca
gcagcggtgagtaacgatgaagtgggagcaatgttagaaaagcttgcagccgatgttgaa
gtgttacttactgcaatgggcccagctgcacctcccccacaacactctgcacttcatagt
ctactagaatctattatcttaacaagaagatcaagagatgcgggtgctgctatgacatta
ctcaagaaggctgtggaaggattgttggacggtcccacaatctcaagtggtgtgatagat
tccgaatttatactacgatatagagaactccatttacgtattctaaagtgtcttcaagat
ccgcgtgcgtacggtatgcagtggacaaacaaacacgttactcgttgtttaactgaatgt
agagaagaatttcgatacaattttgaagctgtcgattatctcataagatctcatctaatt
agtcttccgcagtatgacttggccttagctcaagctatagattctggaaatgccatggca
actgcatttgcgatgcaactggtacaactttatttagttgatgaaagacaaactacgcac
gttaccgaatccgatttgtttcacacaattgaaatactagcgagaatggctcatcataga
gcaccacccgaaggaatcttattattcagattgacgagtttgatagaatccttgcgcgct
aatcatgatccaggtgtactagcggatagagctcctgctggacctacggcgcatatacat
tctggaattctgcaggtgagagcacgtgactttgacgacccgcccggattgatggaaaaa
acagagtatttgctccgtgaatgggtatcaatgcatcataatccaacgcacgcgcgtgat
cccacgaaagctttcggaatgtttgttcatcaaatgaacatgcatggaattttgaaaacc
gatgatctcataacaagattctttaaactgagcacacaaatgtgcgttgatttgtgttat
cgtgctctagccgagaccaacgcggccccatctgttgttcgtgcaaagtgtttccattcg
ttggacgcttttgtccgtttggtcgcgcttttggtaaaacattctggtgatagtacaaat
actcatacaaagattaatctcctaaataaggttctgggaattgtcgccggtgtattactg
caggatcacgaaatacgtggaactgattttcaacaactaccctatcacagaatctttatt
atgctcttcttagagctctgcgcccctgagccagtattagaagcagtgaattaccaagta
ttaactgctttctgtcatactctgcatatacttaggccagctaaagcttcaggattctgc
tacgcttggctagagctagtttcacacagagttttcattggccgcatgctcgcgatcaca
ccacaacaaaaatgttggggaatgtacgctcagcttttgatcgacttattcaaatacttg
gcacctttccttcgaaatgccgaacttgcgaagcctgtcaccctgttgtataacggaaca
ctccgagtgatactggtgttattacacgacttcccagagttcctttgcgactatcattat
ggattttgtgatgtgatccctcctaactgtatacaaatgaggaatctgattttaagcgcg
tttccaagaaacatgcgcttacccgatccattcacaccaaacctgaaagtcgacatgcta
ccggagatagcgcacgccccgcgagtgttgaccaactttgcgtctatgatacaaccgctt
agtttcaaaaaggaacttgattcgtatttaaaggcgcgtgctccagtcaccttcctttct
gaactgcgcagtaatttacaagtatcccaagaagcgggtgttcgttataatagtcaatta
atgaacgccctagtactttacgttggtacccaagctatagctttcattcgtagcaaaggg
catacaccgaatatgtccactatcgcacattctgcacatatggatatatttcaaaacttg
gcggtcgatctcgatacagaaggacgttatttgtttttaaacgcgatcgcgaaccagcta
cggtaccccaacagtcatacgcattatttcagctgcacgcttttgtacttgttcgccgaa
gctaacaccgaagcgatacaagagcagatcacaagagttcttctggaaagacttattgtg
aacagacctcacccatggggtctacttattaccttcattgaacttattaaaaatccaaca
tacaagttctggacgcacgagtttgttcactgtgcaccagaaatggaaaaattattcgac
tcagttgctaaatcgtgtatggttcaacaactacagcccactccggaaccggagatccca
aagtcatag
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integrated database retrieval system
