Nomia melanderi (Alkali bee): 116424972
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Entry
116424972 CDS
T07404
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116424972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116424972
Enzymes [BR:
nmea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116424972
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116424972
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
S100PBPR
Motif
Other DBs
NCBI-GeneID:
116424972
NCBI-ProteinID:
XP_031827939
LinkDB
All DBs
Position
Unknown
AA seq
532 aa
AA seq
DB search
MKDIIDKNFEESYPDVHSAIKEASFVAIDTEFTGIQSNDGQKYSFIDSLDKRYESLKKNI
EPYIIIQCGIAAFKKVPENSYTVKCYNFYLLPRSVPYKNRQFLCQVSAMEFLSLHNFDFN
RCLSEGVSYINQSEEEQLKVHIDKGDLDNNLKHLSYGEEDDFKYCKNKVEEFLKQTDKIS
FTLQTPSPILQYMMHKELRNNFKNIWTIPGYKSITVVRVSNDMRNMFEQDNICLEQELLD
TYIGFSKIFKLLVTLKKPIVGHNMLLDLMFMHQQFYNPLPQKYKEFKNNIHSIFPQVYDT
KFLSYQLKKINKKVSWKTNSLSGTYNYFKSNEGKYLTYNAPNVLMHPSNESNTDVEAYHT
AGWDAYVAGYIFVKIGHILAVEKYGQGLQNRTISSAELMGSVKTLENCINVAANTEMYLK
LDGYDPPLIKPQWLHVKSNSSSIDMREISEKFSSFGPINVLPFTRKRVLVQVSSRQRALD
LINHFQKSKEFQVTKYTPIWHAHPTSIALWTSMLLSGTMVAWIVHRMFKKSH
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatataatagataaaaattttgaagaatcctatccagatgtacatagtgcaata
aaagaagcatcctttgtagcaattgatacagaatttactggaatacaatcgaatgatgga
cagaagtatagttttattgattcgttggataaacgatacgaatcattaaagaaaaacatt
gaaccgtacataataattcaatgtggtattgctgcatttaaaaaggttcctgagaatagt
tacactgtaaagtgctataatttctatttgttaccaagatctgtaccatataaaaatagg
caatttttgtgtcaagtatctgctatggagttcctctctctacataattttgattttaac
cgatgtttatctgaaggtgtatcatatataaatcaaagtgaggaagaacaattgaaagtg
catatagataaaggtgatttagataataatttaaaacatttatcttacggagaagaagat
gattttaagtattgtaaaaataaagtcgaagagtttctgaaacaaacagataaaatctct
tttacattacaaactccttcacctattttacaatatatgatgcataaagagttaaggaac
aatttcaaaaacatttggacaataccaggttacaaatcgataacagttgtacgagtatca
aatgacatgcgtaacatgtttgagcaagataatatatgtttggaacaagaactgttagat
acttatataggattttctaaaatatttaaacttttagttacattaaagaagccaatagta
ggacataatatgcttttggacttaatgttcatgcaccaacagttctataacccactacca
cagaaatataaagaattcaaaaataatatacattcaatatttccacaagtgtacgataca
aaatttttgagctatcaactgaaaaaaatcaataaaaaggttagttggaaaacaaattca
ctaagtggtacatataactatttcaagtcaaatgaaggaaaatatttaacatacaatgcg
cctaatgttcttatgcatccttcaaatgagtcaaatacggacgtagaagcttatcacact
gcaggatgggatgcctatgttgcaggatatatttttgtaaaaataggacatatattagct
gtagaaaaatatggacagggcttgcaaaatcgaacaatatcatctgctgaattaatggga
agcgtaaaaacgttagaaaattgtataaatgtagcagcgaacactgaaatgtatttgaaa
cttgatggatatgacccaccattgataaaaccacaatggctgcatgtgaaatcaaattca
tcatccatagatatgagagagattagtgagaagttttcatcttttggacccataaatgta
ttgccttttactcggaaacgtgttctggtacaagtttcaagccgtcaaagggcgctcgac
ttgataaaccattttcagaagagcaaggaattccaggttacgaagtacacccctatatgg
cacgctcatccgactagtatagccttgtggaccagtatgctgttatccggcaccatggtc
gcctggatagtccaccggatgttcaagaagtcacactga
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