Nomia melanderi (Alkali bee): 116426570
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Entry
116426570 CDS
T07404
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116426570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116426570
Enzymes [BR:
nmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116426570
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116426570
mRNA degradation factors
3'-5' decay
Ski complex
116426570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
ATPase_2
Motif
Other DBs
NCBI-GeneID:
116426570
NCBI-ProteinID:
XP_031831546
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
MNQINTTYKMDIKDNINIEFPLELPPIGPDIKTELTEYIVCLDNFPTYKLVNAQCYWPRK
PDILSLLDFDLAPLGTTLKFDCDPISKKQQTMCEVPLQSAGETARNSMSMTRAPGPAVES
IRGNTSNIPFFPGGFDEPEMIEDPSMEEIDFENNLRTLARGFSAGVEFKSDNCTSKEVVT
QEEQVSEPEKNEIERIADKINLMSIVNEERNVLGLWLPELKETKEEETGKETSNVQGPSF
DDIVPLLKESNVPILKISEKPSENRKSEWAEQIDVSVPVIDFEKRIPELAMSFPYELDIF
QKQAILKLEENCNVFVAAHTSAGKTTVAEYAIALSQKHMTRVIYTSPIKALSNQKYRDFK
RKFDSVGLLTGELQINSNASCLIMTTEILQSMLYCASEVLRDLEFVIFDEVHYINNDDRG
HVWEESVILLPKTVNIVMLSATVPNPLIFADWVGRIKKKKMYVISTLKRPVPLQHYLYTG
TDGRTRNNKFLVLDESGQFLLDGWTKALNTKESRNKDKDWKKPMNHQLSPKQEQVLWNAF
IDHLKTNNMLPVVVFMLSRKRCDNSAVLLRNVDLTTESEKYIIRTFFQNNIKQLKGSDRE
LPQVLMMQELLQNGVGIHHSGILPILKEIVEMLFQNGIVKLLFATETFAMGVNMPARTVI
FDSIKKFDGTNFRILHPTEYIQMAGRAGRRGHDTAGMVIVMCTTSVPHFNLLNTMMCGQP
QNLESKFKVTYSMVLNLRRVNESVSVEAMMRRSFKESPLALKQSTYKVQLQKVEDELAKS
PPLTEIQKKLSEFYRVAIDYIEYLKYLKPLIFETQKREMKYLEPGRVLLISFAGHYNKLA
LLLSTVQSKSIRQYRVLVLKDSESSKSIEDKTAEFPKDPLWHDIVALTKHELYVPSGVAS
SEVLTVPIWNILEITSCKIKVDYTLVLSNWEKKQIPRFRNEPHGPTYETAIQELMTLSLN
AARDPSILKPYVEMKLNYDADLKLLNLLHLKQTISDMNCTKISNFEEQFKTVFERNELEN
KKKKLQLRLSDEELILFPEYTNAVALLKELGYIDHDERVALKGRVALQMGNNELLITELI
LKNVFTVLEPAEIAALLSTLIFQQRTKVEPNLPATLKKGCEEIKQIYTQLVNLENHYQLS
TLQPLNFGLVEVVYDWAQSKSFAEIMEKTDVQEGIIVRCIQQLSETLRDVKNAAMTIGDP
VLKEKMEEASTVIKRDIVFTASLYTTD
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaataaataccacttacaaaatggatataaaggataatataaatatagagttt
ccacttgaattaccacctattgggcctgatatcaagacggagttaacagaatatattgtg
tgtttggacaattttccaacatataaacttgtcaatgcacaatgttattggccaagaaaa
ccagatattttatcccttttagactttgacctagccccacttggaactactttaaaattc
gattgtgatcccattagtaaaaaacaacagacaatgtgtgaagttcctttacagtcagct
ggtgaaactgcaagaaattctatgtctatgactcgtgcaccaggacctgctgtggaaagt
atcagaggtaatacaagcaatattccattttttcctggtgggtttgatgaacctgagatg
atagaggatccatcaatggaagaaattgactttgaaaataatttaagaacattagcaaga
gggttcagtgctggtgtggaatttaagagtgataactgtacttctaaagaggttgttact
caagaggaacaagtttcagaaccagagaaaaatgaaattgaaagaatagcagataagatt
aatttaatgtcaattgtaaatgaagagagaaatgttctaggattatggttaccagaactg
aaagaaacaaaggaagaagaaactgggaaagaaacttcgaatgtacaaggaccatcattt
gatgatattgttccattattaaaagaatcgaatgttcccattttaaaaatctcagaaaaa
ccttcagaaaatagaaaatcggaatgggcagagcagatagatgtgtctgttccagtaatt
gattttgaaaaacgtattcctgaactagcaatgagttttccttatgaattggacattttc
cagaaacaagcaatattaaagttggaagagaattgtaacgtgtttgttgcagctcatacg
tcagctggaaaaacaactgtagcagaatatgctattgctttgagtcaaaagcacatgact
agagtcatctatacatctcctattaaagcactttcgaatcagaaatacagagactttaag
agaaaattcgatagtgttggattgttaacaggagagttacaaattaactcaaacgcctcg
tgtcttatcatgactacagaaattttacaatctatgttatattgtgcatctgaagtttta
agagatttagagttcgtaatattcgacgaggtgcattatattaataatgacgatcgtggt
catgtttgggaagaaagcgtcattcttttaccaaaaacagttaacatagtaatgttgtca
gcgactgtgccaaatccgttaatatttgcggactgggttggccgtattaagaaaaagaag
atgtatgtgataagcactctaaaaagaccagtaccacttcaacattatttatatactgga
actgatggtagaacaagaaacaataaatttttggtgttggacgaaagtggtcaattttta
ctagatgggtggactaaagcattaaacacaaaggaatcaagaaataaagataaagattgg
aaaaaaccaatgaatcatcagttgtctccaaagcaggaacaggtcttgtggaatgctttt
atagatcaccttaaaaccaataatatgttgccggtagttgtcttcatgctatcacgaaag
cgttgtgacaatagcgctgttctgttgagaaatgttgatcttacaaccgagagtgaaaag
tatatcatcagaacattttttcaaaataatattaaacaattaaagggtagcgatagagag
ttaccacaggttctcatgatgcaggaactattgcaaaatggtgttggtattcaccatagt
ggcatattaccgattttaaaggaaatagtggaaatgctttttcaaaatggaattgtaaag
ttattatttgcaacagaaacatttgcaatgggtgtgaacatgccagcacgtacagtaatt
tttgattcgattaaaaagttcgatggcactaatttccgaatacttcatcccaccgagtat
atacaaatggctggacgtgctggtcgtagaggacacgatacggcaggaatggttatagtt
atgtgtacgacatcagtaccacatttcaacctattaaataccatgatgtgtggtcagccc
caaaatttggaatctaaattcaaagtcacatactctatggtgttaaatctgagaagagtg
aatgagtcggtatcggttgaagcaatgatgcgtagatcctttaaagaatctccgctagct
cttaagcaaagcacttacaaagtccaattgcaaaaagtggaagatgaactggcgaaatca
ccacctttaactgaaatacagaaaaaactcagtgaattctatagagtagctattgattat
atagaatatttaaaatatctgaaacccttaatatttgaaacgcagaagagagaaatgaaa
tatttagaacctggaagggttttgcttatatcatttgcaggtcattataataaattagct
ttattgctgagtaccgtccagagtaaaagtataagacaatatagggtattagtacttaaa
gattctgaatcatcaaaatctattgaagacaaaacagccgaatttcctaaggatccattg
tggcacgatattgtggctttaacgaaacatgaattatatgtaccgagtggagttgcatct
agtgaagtgttaaccgtacctatatggaacatattagagataactagctgcaagattaag
gttgattatactttggttctgtcgaattgggaaaaaaagcaaatcccgagatttaggaat
gaaccacatggtccaacgtacgaaacagccatacaagagttaatgacactatccctgaat
gctgcacgcgatccttctattttgaaaccatatgtagagatgaaattgaattacgacgcg
gacttgaaactgttgaacttgttgcatttaaagcaaacgatttctgatatgaactgtacg
aaaatttcaaacttcgaagaacaatttaagactgtatttgaacgaaatgaactggaaaat
aagaaaaagaaacttcaactgagacttagtgatgaggaattgattctttttcctgaatat
acaaatgctgttgcccttcttaaggaattaggatatatagaccatgatgaaagagttgca
ctgaaaggtcgtgttgcattgcaaatgggaaataatgagttgttaatcacagaacttatt
cttaaaaatgtctttacggtacttgaaccagctgaaatagcagcactgttgtctacttta
atattccaacaacgaacgaaagttgaaccaaatcttccagcgacattgaaaaagggatgt
gaagaaataaaacaaatatatacccaactagtaaatttagaaaaccactatcaattatcg
acattgcaaccgttaaatttcggtttagtggaagtggtttacgattgggcgcaatctaag
tcgttcgctgaaataatggaaaaaacggacgtacaggaaggaattatagtgcgatgtatt
caacaattaagtgaaacattaagagacgttaaaaacgcagctatgactatcggtgatcct
gttctgaaagaaaagatggaggaagcttctacagttattaaaagagacattgtttttacc
gcatctttatatactacagattaa
DBGET
integrated database retrieval system
