KEGG   Nomia melanderi (Alkali bee): 116428325
Entry
116428325         CDS       T07404                                 
Name
(RefSeq) DNA ligase 3 isoform X1
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
nmea  Nomia melanderi (Alkali bee)
Pathway
nmea03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:nmea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    116428325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nmea03400]
    116428325
Enzymes [BR:nmea01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     116428325
DNA repair and recombination proteins [BR:nmea03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     116428325
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N zf-PARP DNA_ligase_A_C LIG3_BRCT RNA_ligase RovC_DNA-bd CDC73_C
Other DBs
NCBI-GeneID: 116428325
NCBI-ProteinID: XP_031835659
LinkDB
Position
Unknown
AA seq 1012 aa
MSDDEKEEEKPFAVERAKTGRAKCKKCKCPIDKDAVRIAKLVSNPFGDGKMKAWHHVTCL
FDVFAKQRATTKRIDDPEEDIDGWHDLCEEDRKIILQKLEEFENSAPFKTPKAKKEADTS
KRKATPTKGTVAKPNKTKQEDKSSSEDLADSKSKNRKAVPSKDDSFEAFQKLCEDIAKVD
AYTDKTAVVRKMLTKGSTGDGFKSDTVLWVKMLLPAAMKRIYNLQSKQLVKLFSRILLQD
EDEMLEHLEQGDVAETIRLFFEKNLAVQPASKSVLTIQEVEQFLEKLSFLTKEDEQIQHF
RSLISSCTCNDLKMIIRLIKHDLRINAGPKHILGAVHDDAYAAFQTSRDLVNVVKRCLPD
SRGGQPPPSSSKSPSGNKVALTLMTPVLPMLAEACKSVEMAMKKCPRGMLSEVKYDGERV
QVHKRGSEFRYFSRSLKPVLPHKVNLFKEYIPKAFPGGDDLILDSEILVIDTKTGQPLPF
GTLGVHKRAEFKDANVCLFVFDCIYYNGEVLLNKSMMHRRQILKEKMTEIPNRIMLSEVQ
EIHYPRDLAEMIAKVLKLGLEGLVLKDVTGKYEPGKRHWLKVKKDYLFDGAMADSADLVV
LGAWYGTGNKGGMMSIFLMGCYDEDSDKWLTVTKVHTGHDDATLTLLQNELDMVKIGKDP
NKVPSWLRAKKPMIPDFVARDPKKQPVWEITGAEFTDQGVHTADGISIRFPRVTRIRDDK
DWSTATNLAELRNLFNKKSDSIDLSLLLSDSKPRTSVTNESIENSSFDDTKVEETESPRE
PKKRRKSKKENGEKTAKKGRDTGIFTGAKIKEEPVEKKVKTKESKIKEEPLDAKIKEEPR
DEPEVGCQEAEDEARPEFYAFVDKDYVEYSAAGAPLNWIDGREPQHGLPRDAKPLSSFSA
GELKTRTILKGAPVILAPGFKRKKRERVRRMLKTLGARLLGERERSMATHVIHPSQEISS
TAIHEFEATPKTARHVTVAWLEASASASTPPETEEFAVQLAPDYCDCPCQHR
NT seq 3039 nt   +upstreamnt  +downstreamnt
atgtcggacgacgagaaggaagaggagaagccgttcgcggtggagcgagcgaagactggc
cgcgcgaaatgcaagaagtgcaagtgcccgatcgataaggatgccgtgaggatcgcgaaa
ctggtctcgaatccgttcggcgacggcaagatgaaagcctggcaccacgtcacgtgcctg
ttcgatgtgttcgcgaagcagagggcgactaccaagcggatagacgatcccgaggaggat
atcgatggctggcatgatctctgcgaagaggataggaagattatcctgcagaagctcgag
gaattcgagaattctgcgccgtttaagacacccaaagcgaaaaaagaagcagacacttcg
aagcgcaaagcgactcccacgaaaggcactgtcgcaaagccgaataagacgaaacaagaa
gacaagtcctccagcgaggatctggcagattcgaaatcgaagaaccgtaaagcagttccg
agtaaagacgattccttcgaggcgtttcagaagctgtgcgaggacattgccaaagtcgac
gcgtacaccgacaagaccgcagtcgttaggaagatgctgacgaaaggatccactggcgat
ggtttcaagagcgacacggttctctgggtgaaaatgttgttaccagcagctatgaagaga
atctacaatctacagagtaaacagttggtgaaattgttctccagaatactgctacaggac
gaagacgagatgctggaacacttagagcaaggggacgtggctgaaactattcgattattt
tttgagaagaacctcgctgtgcagcctgcttctaaaagtgttcttactattcaagaggtc
gagcagtttctggagaaactgtcgttcctgactaaagaggacgagcagattcagcacttc
cgctcgctcatttctagctgcacttgcaacgatctgaagatgatcatcaggctaatcaag
cacgacctaaggataaacgctggaccgaagcacattttaggggcagtgcacgacgacgcg
tacgctgccttccaaacgtccagggacttagtcaacgttgtcaagcgttgtttgccagat
tcgaggggcggacagccgccgccatcttcttcgaagtcgccttccggcaataaagttgcc
ctcactttgatgacgcccgttctgccgatgctggcggaagcttgcaaatccgtcgagatg
gcgatgaagaaatgtcctcgcgggatgctgtctgaagtgaagtacgacggggaacgtgtc
caagtgcacaagagaggcagcgagtttcgatatttcagcagatcgctgaaacctgtgctt
cctcacaaagtgaacctcttcaaggagtacattccgaaggcgttcccaggcggcgacgat
ttgatcttggattccgagatcctcgtgatagacacgaagactggccagccgttgcctttt
ggcactttaggcgttcacaagagagcagagttcaaggacgccaacgtctgcctcttcgtg
ttcgactgcatctactacaacggcgaggtgttgttgaacaagagcatgatgcatcgaaga
caaatcctaaaggagaagatgaccgaaatacccaataggataatgctgtcagaggtccag
gaaattcattatcctcgggatttagcggaaatgatcgccaaagttctcaagttgggcctc
gagggattggttctaaaggatgtcactggtaaatatgaacctggcaagagacactggctg
aaggtaaaaaaggattacttgttcgacggtgcgatggccgacagcgcagatctcgtcgtt
ctcggcgcatggtacggcacagggaacaagggtggaatgatgtcaattttcttaatgggc
tgctacgacgaggacagcgacaagtggctcactgtgaccaaagtgcacactggccacgac
gatgctaccttgactttattacagaacgaactggacatggtcaagataggcaaagaccct
aacaaagtgccgtcctggctgcgagcgaagaagcccatgattcctgacttcgtggcgagg
gatccgaagaagcaaccggtatgggagatcacaggcgcagagttcacggaccaaggtgtc
cacaccgcagacggaatcagcatcaggttcccacgggtgacgcgcatccgcgacgacaag
gactggtccaccgcgaccaatctcgccgagctgcggaatttgtttaacaaaaaatcggac
tccatcgacttgagcctccttctctccgattccaagcctagaacatcagttaccaacgaa
tcaatcgaaaacagttcattcgacgacacaaaggtcgaagagaccgagtcgccgagagaa
ccgaagaagcgcaggaagtcgaagaaggaaaacggcgagaaaactgcgaaaaagggacgc
gacacaggaatcttcactggtgcaaagataaaagaggaaccggtcgagaagaaagtgaaa
acgaaggaatcaaagatcaaggaagaacctctggatgcgaagataaaggaggaaccacgc
gacgaaccggaagtaggctgccaggaggcggaggacgaggcgaggccggagttctacgcg
ttcgtggacaaggattacgtagaatattccgcagccggcgcgccgctgaactggatagac
ggacgggagccgcagcatggcctgcccagggacgccaagccgttgtcgagtttctccgct
ggcgaactgaaaacgaggacgatcctgaaaggtgctccagttatcctagcaccaggcttc
aaaaggaagaagcgcgaacgcgttcgcaggatgctcaaaacgctgggagccaggctcttg
ggggagcgggagagatcgatggccacgcacgtgatccatcctagccaggagatctcgtcg
acagcgatccacgagttcgaggctacgccgaagacggcccggcacgtgaccgtcgcgtgg
ctcgaggcttcagcttccgcgtccacgccaccggaaacggaggaattcgcggtccagctg
gcccctgattactgcgactgcccgtgccaacatcgatga

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