Nomia melanderi (Alkali bee): 116428353
Help
Entry
116428353 CDS
T07404
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03013
Nucleocytoplasmic transport
nmea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116428353
03015 mRNA surveillance pathway
116428353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116428353
Enzymes [BR:
nmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116428353
5.6.2.5 RNA 5'-3' helicase
116428353
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116428353
mRNA cycle factors
Common to processing body (P body) and stress granule
116428353
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
ATPase
NPHP3_N
SRP54
nSTAND3
AAA_22
AAA_16
nSTAND_NTPase5
AAA_10
AAA_7
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
116428353
NCBI-ProteinID:
XP_031835773
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDPEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDVAQSQPSQ
PVQVNGTSGGSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGAALSK
NKQGPRIGKLSQTEQSTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSHPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacggccccagcagtcagaccctcacgttcctcgacccggaggag
gcggatttaatcggcgcggacacgcagggcagcgaattcgacttcacggacttcacgcta
ccgtcgccgagtcagactcaagcatcgcagcacgatgttgctcaaagtcaacctagtcag
cctgtacaggttaatggaacgagtggtgggtcttccttggacttaaaaatttctggagcc
gcgcagagcctcgctgaattacaatttgaagaggaagaagaggaggcatattataatcgt
gatttaccggagcacgcttgtaaatattgtggaattcatgaagcatcctgcgttgttatg
tgtaatgtctgccgcaaatggttttgcaatggacgtggcaatacatctggttcacatatc
attaatcatcttgtcagagctaaacacaaggaagttactctacatagagatggtccattg
ggagaaacagttctggaatgttactcttgtgccgttagaaatgtctttgttcttggtttc
attcctgcaaaggcagattcggttgtcgtgttactctgccgacagccttgtgcagctcaa
agttccttgaaagacatgaactgggatcaggaacagtggaagcctttgatagaagatcgc
agtttccttgcatggctggtgaaaattccatctgaacaggaacagttacgagctcgtcag
atatctgcacaacagattaacaagttggaagaactatggcgcgacaacgtcgatgcgacg
ttccaagatctagagaaacctggagtggacgaggagccgcaacaagtgctgttgcggtac
gaggatggttaccaatatcagaatatatttggtccgctagtaaaactggaagcggattac
gacaaacgcttgaaggagtctcaaacgcaagagaacattgaagtccggtgggacgttggt
ttgaacaagaagacaatagcgtacttcatgcttgccaaaaccgatggtgacatgaaactg
atgcacggggacgagttgaggcttcgctacttaggtgaactgcacaagccttggtcaggc
attgggcacgtgattaaaatccccgacaactacggcgaagaagtcggcatagaattaaaa
aacaattccggggctccaacggagtgcatcagcaatttcgtcgtcgatttcatttggaag
agcaccagcttcgaccgaatgcagctagcactgcggaaatttgccgtggacgacacttcc
gtttccgcttacatataccacagactactgggacacgaggtggaggaggttctcttccgc
tgtcacttgcccaaacacttcagtgctcctaacctacccgatttaaaccggtcccaagtg
tacgccgttaaacacgcggtgcagaggccgctgtctttaatccaaggaccacccggaaca
gggaagactgtgaccagcgcgacgatagtttatcaattagtgaaacaaaatggcggaccc
gtactagtatgcgctccctccaacacagcagtggatcaactcacagagaagatacataag
tcaaacctgaaggtagtacggctatgcgcgaaatcaagagaagcgatcgactcgcccgtg
agcttcctggctctgcacaaccagatcaagaacatggagacgaacaccgagctacagaag
ctacaacaattgaaggatgaaaccggtgaactatccagcgtcgacgagaagcgctacaga
ctgctgaagaaagcagcagagaaggaactgctagaagcggccgacgtaatttgctgtacc
tgcgtgggagcaggtgatccaagactacacagactgaaattccactcgatcctcatcgac
gagagcatgcaagccaccgagcccgagtgcatggtaccagtcgtcctcggagcaaagcag
ctaatcctcgtcggggaccactgtcaactaggaccagtggtcatgtgcaagaaggcagcc
agagcaggtctgtctcagtccctgttcgagcggctggtcgtcctcggaatcagacccttc
cgcctggaggtgcaataccgcatgcacccggacctctcgcgcttcccgtcgaacttcttc
tacgagggctccctgcagaacggcgtgtgcgccgacgagaggaagctgctgaagatcgac
ttcccctggcccgccccggacaagcccatgttcttctacgtgacccagggccaagaggag
atcgccgggagcggcacttcctacctgaacagaaccgaggcgtcgaacgtcgagaagata
gccacgcgcttcctgcgctgcggcgtgaagcccgagcagatcggcgtgatcaccccgtac
gaggggcagcgggcctacctggtgcagtacatgcagtaccagggctcgctgcactcgaag
ctctaccaggagatagaggtggccagcgtggacgcgttccagggcagggagaaggacata
atcataatgtcctgcgtgcggtccaacgagcaccagggcatcggcttcctgaacgacccg
cggcgcctgaacgtcgcgctgacgcgggccaagtacgggatcatcatcgtgggcaacccc
aaagtgttatccaagcagccgctctggaaccatctgctgagcttctacaaggagcagaag
gtgctcgtggaggggccgctgaacaacctcaaggagtccatgatccagttcgccaagccg
aagaagctggtcaacgccgccaatccgggctcgcacttcatgtccacctccatgtacgac
gccagggaggcgctgatcccgggctcggtgtacgacaggtcaggcacccaggtgaacggg
acgcagaaccataacccctattaccagaggaacgtgccgctggacatattcagcaggacg
cacgacaccatcagctacatcagcccggaaagagcgcaggcggccatgaacaacgtgccc
gttcctgttggcatgttcatgaatatggcgcacgtgccaccacggttttataatcaacat
cagcaagcgttacaggctaggcagaaccagcggaaccgtcgcggcgccgctctgtccaag
aacaagcagggtccgcgcatagggaagctgagccaaacggagcagagcacgcagccgtac
agtcagccgggtctgcccttgacgcagggcacgacgcagggcatgtctcagccgggcttc
agcctttcccagccgggcctgagccaagcggagctgtcgcaggactcgttcgcggtcggc
gagttccagtcgcagatggacggcttattgtcacaggattcgacctaccagggcgaccga
agtggtttctatcagtccggacagtcacaagccggtgggcagttctcccacccatactga
DBGET
integrated database retrieval system
