Nomia melanderi (Alkali bee): 116429981
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Entry
116429981 CDS
T07404
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116429981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116429981
03041 Spliceosome [BR:
nmea03041
]
116429981
03009 Ribosome biogenesis [BR:
nmea03009
]
116429981
03016 Transfer RNA biogenesis [BR:
nmea03016
]
116429981
Enzymes [BR:
nmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116429981
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116429981
Spliceosome [BR:
nmea03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116429981
Complex C
U4/U6.U5 tri-SnRNP related factors
116429981
Ribosome biogenesis [BR:
nmea03009
]
Eukaryotic type
Pre-60S particles
Helicases
116429981
Transfer RNA biogenesis [BR:
nmea03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116429981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
116429981
NCBI-ProteinID:
XP_031839430
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MANFTDDLFDVFEETEEVIEVIPTPVKQNDVKTALNEKTVETESSSKRGLDSGEGGSAEI
IAKKFRPDPVLEDLNIEELASRIKIHSIETIESCTHEVAVPPDYEYIPLESKQGKSAKEY
KFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSN
QKYREFFEEFKDVGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHY
MRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPL
QHYIFPVGGDGIHLVVDETGQFKEENFNRAMACLQHGDAAKGDTKGRKGGMRASNAGQTN
IFKMVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDLNTVEEKKLVDEVFNNAMDVLNE
EDRRLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPA
RTVLFTASRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVIGKAIVQ
GKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNKVKELQAAYN
AVNIEKYSQISSYHDIREQLERLTTNFRSYLTKPEYLLPFLQPGRLVKVKNENEMFDWGI
IVNFKKKNPKNPTGKENTVIIIDILLHISKDSSEGCPVPCRKGEEGEVEVVPVLHTLISQ
ISSLRLYYPKDLRPSDNRKSVLKTIQEVKKRFPNGPPLLNPITDMRIEDEGFKDIVKKIE
VLEERLYAHSLHKDPNVNTLYEQFLNKEDLGNRLKQAKTELKKAKSILQMDELKCRKRVL
RRLAYCTVSDVIELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMTALISCFVCDDKS
NEMPKSTEELSGPLRQMQDLARRIAKVSTEANLELDEDAYVERFKPYLMDVVYTWCKGAS
FLQICKMTDIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAS
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggccaatttcactgacgatttgttcgacgttttcgaagagacggaagaagtgatagaa
gtgataccgacaccagtgaaacagaatgatgtaaaaacggctttaaatgaaaagacagta
gagacagaaagcagttcgaaacgtggacttgattcaggcgaaggtggctctgctgaaata
attgcgaaaaaattcaggccagatcctgttttggaggatttaaacatagaagaattagct
tcacgcatcaaaatacatagtatagagacaatcgagtcttgcacacacgaagttgctgtt
ccaccggattatgaatatataccactggaaagtaaacaagggaaatcagcgaaagaatat
aaatttgtactagatcccttccagaaagaagcaatattgtgtatagaaaacaatcagtct
gttttagtttctgcacatacatcagctggtaaaactgttgtcgcagaatacgccatagct
tgttcgttaagagacaaacaaagagtaatctatactactcctataaaggcactgagtaat
cagaagtacagagaattctttgaggagttcaaagatgttggtttggtaaccggtgatgtt
accatcaatccgacggccagcgttttgattatgactaccgaaattttaagaaacatgctt
tacagaggatccgaggtaatgcgtgaagtcggatgggtaatcttcgatgaaatccattat
atgcgtgataaagaaagaggcgttgtatgggaagaaacgttaatattgttaccagacaat
gtgcattacgtatttctttctgctactatacccaacgcgcgacaattcgtggaatgggtt
gcacatttgcacaaacaaccatgccatgttgtttacacagactacagaccaacaccgtta
caacattatatattccccgttggcggggatggaattcacttggttgtagacgaaaccggc
caatttaaagaggaaaattttaatagagcgatggcatgcttgcaacacggcgatgcagct
aaaggtgacacaaaaggtcgtaaaggaggtatgcgagcatcaaatgctggacagacaaat
atttttaagatggtgaaaatgattatggaaagaaatttcgcgcctgtaattatattcagc
ttctcaaagaaggactgtgagatttatgcgatgcaaatggctaaattagatttgaatacg
gtagaagaaaagaaattagttgacgaagtgttcaataatgccatggatgttctgaacgaa
gaggacaggcgtttgccacaagttgaaaatgttttaccacttctaagacgtggaatagga
attcatcatggtggacttttgcctattctaaaagaaactgtggaaatattatttggtgaa
ggattaataaaagcgcttttcgcaacagaaacttttgcgatgggattgaacatgccagcg
cgaacagtattatttaccgcatcgcgaaaattcgacggtaaagatttccgatggattact
tctggtgaatacatacaaatgtctggtcgagcgggtagaagagggctagacgaaaaggga
atagtaatactaatgatcgatgaacaagttagtccagttattggtaaagcgattgtgcaa
ggaaaagcagaccctattaactcagcatttcatttaacttacaacatggttctaaatctc
ctaagagtcgaagaaattaatccagaatacatgcttgaaaggagcttttatcaatttcag
aatcaagcctctatccctgatttatacaataaggtaaaggaattacaagcagcatataac
gcagtgaatattgaaaagtatagtcaaatatcgtcttaccatgacatacgtgaacaactt
gaacgtcttactactaattttcgatcttacttgacaaaaccagagtatttactacctttc
cttcaacctggaaggctagtgaaagttaaaaatgaaaatgaaatgttcgactggggtatt
atagtaaatttcaagaagaagaacccaaagaatccaacaggaaaggaaaatacagttatt
atcattgatattttacttcacatttccaaagattctagcgaagggtgtccggtaccttgt
cgcaaaggggaagaaggtgaagtggaagtggtccctgtattgcacacattaatttcccaa
ataagttcccttagattgtattatccaaaagatttaagaccatcggacaacaggaaaagt
gtgttgaaaacgatacaagaagtaaagaaaagatttcccaatggaccaccacttctgaat
cctattacagacatgcgaatagaagatgaaggatttaaggatatcgttaaaaaaattgaa
gtactcgaagagagattgtatgcacattctctacataaggaccccaatgtaaatacgcta
tacgaacaatttttgaacaaagaggatttgggcaatcgattaaagcaagccaaaacagaa
ttgaaaaaagccaaatcgatacttcaaatggatgagttgaaatgtagaaaaagggtactg
cgaagattagcatattgcacagtgtctgatgttatagaattaaagggtcgtgtggcctgt
gaacttaacggtgccgacgaattgttgatgacagaaatgatcttcaatggtttattcaat
tcgttgagcgtgccacaaatgacagcattaatcagttgtttcgtttgtgacgataaatcg
aacgaaatgcccaagtctaccgaggagttaagtggtccgcttagacaaatgcaagattta
gctcgaagaatagcgaaggtatctacagaagccaatttggaactagacgaggatgcatac
gtggaaaggtttaaaccctatctcatggatgtagtgtatacttggtgtaaaggagcttca
tttttacaaatttgtaaaatgacagatatatttgaaggttcaattatacgatgtatgcgt
cgtttagaggaagttcttaggcaattgtgtcaagcggcgaaaaacattggaaacacagac
ttagagaataaatttagcgaagcgattaaacttataaaacgtgatattgtcttcgcctca
tctttgtatttataa
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