Nomia melanderi (Alkali bee): 116431689
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Entry
116431689 CDS
T07404
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03008
Ribosome biogenesis in eukaryotes
nmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116431689
09123 Folding, sorting and degradation
03018 RNA degradation
116431689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmea03021
]
116431689
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116431689
03009 Ribosome biogenesis [BR:
nmea03009
]
116431689
03016 Transfer RNA biogenesis [BR:
nmea03016
]
116431689
Transcription machinery [BR:
nmea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116431689
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
116431689
Ribosome biogenesis [BR:
nmea03009
]
Eukaryotic type
Pre-60S particles
RNases
116431689
Transfer RNA biogenesis [BR:
nmea03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
116431689
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
116431689
NCBI-ProteinID:
XP_031843331
LinkDB
All DBs
Position
Unknown
AA seq
948 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIVECIEQKSIITNGVRVPVNSQDPNPNGVEFDNLYLDMNGIIH
PCTHPEDKPAPKDEDEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETTEKINEIKRIRSELALKGASLPPEKPKEDHFDSNCITPGTPFMARLSKCLHYYIH
ERLNNDPGWRNIKVILSDANVPGEGEHKIMDFIRKQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPRPCDICGQLGHEMKECTGSELNQKEEENAFGSECQYIFV
RLNVLREYLERELQMPNLPFKYDFERAIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLV
NLYKKTVYKTGGFLTDSGDVNLDRVQMIMSDLGDVEDEIFKKRQQNELAFKQREKDKKAR
MQAISNFKPKWIPTGQFAPMPLGERVKPVENARYEAYQMRIQSRNYSSSSEARGNANEAL
ESMIRPENTSNTERKRRAEDIEDSDDDQAHDEVRLWEDGFKDRYYESKFDVAPDNLQFRN
NVALQYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFINIGGLSTEFEKGTIPFRPLE
QLMGVFPAASSKHVPIPWAKLMSDPKSTIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEK
RLFKALEPYYECLTEAEKKRNIRGDDRLYVGLGNSGYNFIKGLYTNKVGFDVETSICIDG
MRGTVLLADDCVGDGATLPSPINGLPVRNNKVYCVRFRDPKYSQNFIYPAKKLKGARDPP
RVLKPQDFEQMNRNSDNAWKPQIGFTPSTQVASLTDAGRRMLGHYTNHNRVPPPFSAVSA
SQGLYPESTHGYQRGYYQGDSRGYESSRSNQQATPSARPWNSGSMVPHNYQRYQHQEYQQ
WNNYSTQPYGRNNYQGSQYNSYHQQRDYSSNYQGNNSGNSNRGGGWRR
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattttttcggtggttaagtagaaagtacccttccgttatcgtcgaa
tgcatcgaacagaagtctataattaccaatggcgtacgagtacctgtgaactcacaggat
ccaaatccaaatggagtggaatttgacaatttatatcttgatatgaatggtattatacat
ccttgtacacatccagaggataaaccagcaccaaaagatgaagatgaaatgatggaagct
atctttgaatgtattgatcgcctgtttcgcatagtgagacctaggaagttactttatatg
gccattgatggagttgcacctagagccaaaatgaatcaacaaagatcaagaagattcaga
gcatcaaaagagacaactgaaaaaattaatgaaattaaaagaatacgttctgaactagca
ttgaagggtgcatcattaccgccagaaaagccaaaagaagatcattttgatagtaattgt
attacaccgggcacaccttttatggcaaggttatcaaaatgtttacattattacatacac
gaacgtttaaacaatgaccccggttggaggaatataaaagtaattttgagtgatgcaaat
gtaccgggtgaaggagaacacaagataatggattttatacgtaaacaaagagcacaacct
gatcatgatcccaacacgcaacacgttctgtgcggagcagatgctgatttaattatgttg
ggacttgctacacatgaaccgaatttcacaattattcgtgaagaattcaaaccaaataaa
ccaagaccatgcgacatatgcggtcagttgggccacgaaatgaaagaatgtacgggttct
gagctaaatcagaaagaagaagagaatgctttcggatccgaatgccagtacatatttgtg
cgattaaatgtactcagggaatacttagagagagagttgcaaatgcctaatctaccattt
aagtacgatttcgaacgagctatcgatgattgggtgttcatgtgttttttcgtaggaaat
gattttctacctcatctcccatcattggaaattagagagggggcaatcgatagactcgtt
aacttatataaaaaaacagtatataaaacaggaggatttttaacagatagtggagacgta
aatttagacagagttcaaatgataatgtccgacctcggggatgttgaagacgaaattttc
aagaagagacaacaaaacgaattagcgtttaagcaacgtgagaaagataaaaaggctaga
atgcaagcaatcagtaatttcaagccgaagtggattcctactggacagtttgctcctatg
ccgttgggtgaacgagttaaaccagtggaaaatgctcgttatgaagcttatcagatgcgt
attcaaagtagaaactacagtagttctagtgaggctaggggaaatgctaatgaagctcta
gaaagcatgatacgtccagagaatacatcaaacacagagcgcaaacgtagagccgaagat
attgaagattcagacgatgaccaagcgcacgatgaagtgagattgtgggaagatggcttt
aaagatcgctattacgaatcaaaatttgatgtcgctcccgataatttgcaatttagaaac
aatgtagccttgcaatacgtgcgaggtttgtgttgggttctacggtattattatcaaggt
tgcgcgtcttggaaatggtactttccttatcattatgctccattcgctagtgatttcatt
aatattggcggcttgtcgaccgaatttgagaaaggaactataccgttccgtccattggaa
cagctaatgggagtatttccagcagccagtagtaaacacgttcctattccatgggctaag
ttaatgagtgatccaaaatcaacgataatagatttctatccagaagattttaagatagat
ttgaatgggaaaaagtttgcttggcagggagtggctttgctgccatttgtggatgaaaaa
agattattcaaggctttggaaccatattacgaatgcctgacagaagcagaaaagaaacga
aacattagaggcgacgaccgtctctacgttggactaggcaacagtggttacaattttatt
aaaggattatatacgaataaagttggatttgatgttgaaacttctatatgcatcgatgga
atgcgtggtacggtgttactagcagatgattgtgtcggagatggcgccaccttaccctct
cctataaatggacttccagtcagaaataataaagtttattgtgttcgatttagagatcca
aaatacagccagaatttcatttaccctgcgaagaaattgaagggtgccagagacccaccg
cgagtcttaaaaccacaagacttcgaacaaatgaaccgtaacagtgacaatgcttggaaa
ccacaaattggtttcactccttctacccaagttgcatccttgaccgacgcaggacgcagg
atgcttggacattatacaaaccataatagagtgccacccccgttcagtgctgtgtcagca
tcacaaggtctgtatccggaatctactcatggctaccagaggggatactaccaaggggac
tcaaggggatacgagagttccagatcaaaccagcaggccaccccgtccgcgaggccatgg
aactccggttccatggtgcctcataactaccagcgttaccagcatcaagaataccagcaa
tggaataactacagcactcagccgtacggacgaaacaattaccagggttcgcagtacaat
agctaccatcagcaacgggactattcgtccaattatcaaggcaacaatagcggaaacagc
aacagaggagggggttggagacggtaa
DBGET
integrated database retrieval system
