Nomia melanderi (Alkali bee): 116432503
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Entry
116432503 CDS
T07404
Name
(RefSeq) probable DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116432503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmea03400
]
116432503
DNA repair and recombination proteins [BR:
nmea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116432503
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_22
ARM_CUL7_CUL9
Motif
Other DBs
NCBI-GeneID:
116432503
NCBI-ProteinID:
XP_031845385
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MSKVNTLYNYFTSPKTPKQTANKSVPDQTSSTPKRAKEQRNKARTPGKGKENKNTEDRKR
IYKDDEEEEKDEEEPRQVKKRRLVIPDVESGDESGDEFKPDSQDEAEESDSGSEGDPETE
PETQSDEESPVKKKKMSNNTRAKGSAGSKKSEKDKKEPKPSNNAQGNSSTESWPHLRYDF
LQPNKIRDINRKTLKDPNYDPKTVYVPSEFLNQQTPAMRQWWELKSRHFDCVLFFKVGKF
YELYHMDAVTGVKELNLTYMRGEFAHSGFPEIGYGRFSASLIERGYKVARVEQTENPEMM
SQRCSKMTKPTKFDKVVKREICQISSKGTRVYTPQDVEASTPNSNYLLSLVEKCPPGAKT
SHYGVCFLDTTIGDFYLGQFEDDRCNSRILTLLAHYPPVHVVYERGSLSPKTLQILNNTL
AACIKEPLLRETQFWSSSTTLKNLHEGEYFKQSDSSFSWPVGLKPYLNQGDSLGLTPADD
KELAVHALGGCVYLLKDYFLEQQLLAQARFKTYIPPDTSNESSEAKFANNMVLDAITINN
LRIFGEGSLMKTLDRCCTPFGKRLLREWICRPSCRKDVIMQRQEAVQELMDRSEAVQTAR
SLLAGLPDLERLLSKIHAHGNPAKMNNHPDGRAIMFEGHIYSKKRIVDFITTLNSFEDVL
RIVALFEDFNSCLVINCTKVEPDGEFPSLRETLDYFKTAFDHDEAKREGCIVPKKGVDEE
YDSVLMELAEVKKDLERYLEKQRQHFGVKVTFHGSDKKRYQIEIPESQVKKVGSGYELQS
QRKGFKRYYTAEGKELLSRQINAEEHKDRVLKDLNRRIFAKFSEKYDMWNMAVYKLSILD
VLISLAEYALSGDMCIPEIDDGSNGNIYIDIREGRHPCIISDNFIPNDTLLAVEDSAPFM
ILTGPNMGGKSTLMRQIALLTIMAQIGSYVPASSCRLTLVDRIFTRLGANDDILAGQSTF
LVELSETAAILQHASPYSLVLLDELGRGTSTYDGTAIAAAVVDALTKLKCRTLFSTHYHS
LVEDYKTNKDVTLAHMACMVENEEEDEVSQETVTFLYKLSEGACPKSYGFNAARLAGVPP
VITSRAHEISKKLELETNEKHLFASLCKANGPEIRNLIAAM
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagtaaatacgttgtacaactattttacttcaccgaaaactcctaaacaaacg
gctaataaatctgttcctgatcaaacctcttcgacgccgaaaagagcaaaagaacaaagg
aacaaagctagaactcctggaaagggaaaggaaaacaagaatactgaggacagaaaaaga
atttataaagatgatgaggaagaagagaaagatgaggaagagccaagacaagtcaagaag
cgaagattagttattccagatgtagaatctggggatgagtctggggatgaatttaaacct
gattcacaggatgaagcagaagaatctgactcaggcagtgaaggagatcctgaaactgaa
cccgagacacaaagtgatgaagaatctccggtgaagaaaaagaagatgtccaacaacact
agggctaaaggttcagctggttcaaaaaaaagtgaaaaggataagaaggaaccaaaacca
tctaataatgcacaaggcaatagtagtactgaatcttggccacatttgaggtatgatttt
ctacaaccaaacaaaataagagacatcaacagaaagactctaaaggatccaaattatgat
ccaaagactgtgtatgttccttcggaatttttgaaccagcaaaccccagcaatgaggcaa
tggtgggaattaaaaagtagacattttgactgtgttttattctttaaagtaggaaagttt
tatgagctatatcatatggatgctgtcactggagtcaaagaacttaatcttacatatatg
cgcggtgaatttgctcattctggatttcctgaaatcggatacggtcgtttctcagcaagt
cttatagaaagaggatacaaggtagccagagtagaacaaacagagaacccagaaatgatg
tcacaacgttgcagcaaaatgactaaaccaacaaagtttgacaaagttgttaagagagaa
atttgccaaataagctctaaaggtacaagagtgtatactccacaggatgtagaagcttca
acgccgaattctaattatttgttatctcttgttgaaaaatgcccacctggagcaaaaaca
tcacattatggagtgtgtttcttagatacaacaataggagatttttatcttggacaattt
gaagacgatcgttgcaactctagaatactgacactacttgcccattatccaccagttcat
gttgtatacgaacgcggtagtttatctcccaagacattgcaaattttaaacaatacttta
gcagcatgtatcaaggaaccgctgctgcgtgagactcagttctggtcatcttcaactacg
ttaaaaaatcttcacgaaggagaatactttaagcaatcagattctagtttttcgtggcct
gttggtttgaaaccgtatcttaatcaaggcgacagtctaggtttaacaccagccgatgat
aaagaattagcagtgcacgctttaggaggatgcgtgtacttacttaaagattatttcctt
gaacaacaactgttagcacaagcacgtttcaaaacgtacatcccgccagacacttcaaac
gaatcttctgaagccaagtttgcaaataacatggtcttggatgctattaccatcaataat
ctaagaatctttggtgagggctctctcatgaaaacattggatcgttgttgcacgccgttt
ggaaagaggttgttacgcgaatggatctgcagaccgtcttgccgtaaagatgttataatg
caacggcaagaagctgtacaagaactaatggatcgttccgaagcagtgcagactgctcgt
agtctgttagctggtcttccagatcttgaaagattgttgagcaaaattcatgcacacgga
aatccagctaaaatgaacaatcatcctgatggcagagcaatcatgttcgagggtcacata
tattctaagaagcggattgttgacttcatcaccacgctcaacagctttgaagatgttcta
agaatagttgctttattcgaagatttcaacagttgtttagtgattaattgcactaaagta
gaaccggatggcgagttcccatcgctaagagaaacattggattacttcaagactgcattc
gatcacgatgaggcgaaaagggaaggctgcatcgttccaaagaaaggagtggacgaagag
tacgattccgttttaatggagctcgcagaagtaaagaaggacttggaacggtatcttgag
aaacaaaggcaacacttcggtgtgaaagtcacgttccatgggagtgataaaaagcgttat
caaatcgagattcccgagtcacaagtgaagaaggttggttccggatacgagctgcagtcg
cagaggaaaggatttaaacgatattatactgctgaaggaaaggaactcctgagccgacaa
ataaatgccgaggaacataaagatagagtgctgaaagatttgaacagaaggatattcgct
aaattcagtgaaaaatatgacatgtggaatatggcagtttacaagttgtccatcttggat
gttctcatttccctagcggagtatgctctcagcggtgacatgtgcataccggaaatcgac
gatggctcgaatggaaatatatacattgatatcagagaaggaagacatccatgcataata
tcggacaatttcataccgaacgatactttattggctgttgaagattctgctccgtttatg
attctaacaggtccaaacatgggtggtaaatccacgttaatgagacagattgcgcttctc
acgattatggcacaaataggaagctatgtacctgctagctcctgccggctaacactggta
gatcgtattttcacacgattaggagcaaacgatgacattctggccggtcagagtacattc
ctggtagagttgagcgaaactgctgccatactacaacacgcttcgccatactcgctagtg
ttgttggatgaattaggacgtggaacgtcgacttacgatgggaccgcgatagctgcggcg
gtggtagatgcgcttacaaaattgaaatgccggacattattttctacccattaccattct
ctggtggaagactacaaaacgaataaggatgtcactttagcgcacatggcatgcatggtg
gagaacgaagaagaggacgaagtgtctcaggagacggtaacgttcttgtataagctcagc
gagggtgcttgtccaaagtcgtacggcttcaacgcggctcggttggccggcgtgccgcct
gtaattacaagtagggcgcacgagatatcgaagaagctcgaattggaaacgaacgagaaa
cacctgttcgcgtccctgtgcaaagcgaatggacctgaaataagaaacttaattgcggcg
atgtag
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