Nomia melanderi (Alkali bee): 116432630
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Entry
116432630 CDS
T07404
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03013
Nucleocytoplasmic transport
nmea03015
mRNA surveillance pathway
nmea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116432630
09122 Translation
03013 Nucleocytoplasmic transport
116432630
03015 mRNA surveillance pathway
116432630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116432630
03041 Spliceosome [BR:
nmea03041
]
116432630
Enzymes [BR:
nmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116432630
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116432630
Spliceosome [BR:
nmea03041
]
Complex C
Other components
EJC/TREX
116432630
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116432630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116432630
NCBI-ProteinID:
XP_031845641
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDIPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgatgatcttttggattatgaagacgaggaacagactgaacaagtagtt
gatggaagtggggatattcccgctaagaaggaagttaaaggcacatatgtatctatccac
agtagcgggttcagggatttccttcttaaacctgaaatattacgagcaattgtggattgc
ggttttgagcatccttctgaagttcaacacgaatgtattcctcaagcagtgcttggcatg
gacatattatgccaagcaaaatctggtatgggaaaaactgcagtatttgtgttagctaca
ttgcaacaattagaattgactgaaaaccaagtctatgttctcgtcatgtgtcacacaaga
gaacttgctttccaaataagcaaagaatatgagagatttagcaaatatatgcctcatgta
aaggtaggagtatttttcggtggcttgccaattcaaaaagatgaagaagttttgaagaac
acgtgtcctcatatcgttgtcggtactcccggtcgtattctcgctcttgtacgaaataag
aaattaaacttgaagcacctaaaacattttatactcgatgaatgtgacaaaatgcttgaa
ctcctagacatgcgtagggatgtacaggaaatatttagaagcacaccgcacggcaagcaa
gtcatgatgttcagcgctacgttatccaaggaaatacgtcctgtctgcaaaaaatttatg
caagatcccatggaagtctatgtggatgatgaagctaaactcacgttgcacggtctacaa
cagcattacgtgaaacttaaggagaacgaaaaaaataagaagctgtttgaattactagat
gttcttgaattcaatcaggttgttatctttgtaaaatctgtacaaaggtgtatggccttg
gcgcaacttttaacagaacaaaatttccccgccattggaatacacagaggcatgacgcaa
gaggaacggttatccagatatcaacaattcaaagacttccaaaaacgaattctagtagcc
acgaatttatttggacgtggtatggacattgaacgtgtaaacatagtattcaattatgat
atgcctgaagattcagatacgtatctccacagagtagctagagctggccgttttggtaca
aagggtcttgctattactttagtaagcgacgagagtgatgcaaaaattttaaatgatgtt
caggaaagattcgacgtcaacattaccgaattaccggatgagatagatctggcttcgtac
atcgaaggacgataa
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