Nomia melanderi (Alkali bee): 116433491
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Entry
116433491 CDS
T07404
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116433491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nmea03041
]
116433491
03009 Ribosome biogenesis [BR:
nmea03009
]
116433491
Enzymes [BR:
nmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116433491
Spliceosome [BR:
nmea03041
]
Complex A
U2 snRNP components
U2 related factors
116433491
Complex B
116433491
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116433491
Ribosome biogenesis [BR:
nmea03009
]
Eukaryotic type
90S particles
Helicases
116433491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
Cas3-like_C_2
T2SSE
AAA_25
ABC_tran
Flavi_DEAD
AAA_7
Motif
Other DBs
NCBI-GeneID:
116433491
NCBI-ProteinID:
XP_031847488
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MSKRRIEVVDPYVKRKADGSTSNSTTVPSTAPKSQVQLNPYTGLPYTPRFHEFYKKRITL
PVFEYRADFMRLLAQHQCIVLVGETGSGKTTQIPQWCVEYSRCIGIKGVACTQPRRVAAM
SVAQRVSEEMDVALGQEVGYSIRFEDCSSPKTVLKYMTDGMLLREGMSDPMLDAYQVILL
DEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPV
EIFYTPEPERDYLEAAIRTVIQIHMCEEVAGDLLLFLTGQEEIEEACKRIKREMDNLGPE
VGELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDP
GFAKQKVYNPRIRVESLLVSPISKASSKQRAGRAGRTRPGKCFRLYTEKAYKNEMQENTY
PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLG
AVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMRFAH
IDGDHLTLLNVYHAFKQNFEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFCLKRTSTD
FTSKDYYTNIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSSCLDHKPEWVIYNEF
VLTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQSKLDSKQYQEGF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacggaggatcgaagttgtggatccgtacgttaaacggaaggcagatggctcg
acatccaacagtacaactgtgccctcaacagcgccaaaaagtcaagttcagttgaaccct
tacactggtctgccttatacaccaagatttcatgaattttataaaaaacgcatcacttta
ccagtgttcgagtatcgtgctgattttatgaggttattggcccaacatcaatgtattgta
ctagtcggtgaaactggatcaggtaaaactacacagataccacaatggtgtgtggaatat
tcaaggtgtattggtatcaagggtgttgcttgtacgcaaccaagaagagtggcagctatg
tctgttgcacaaagagtttcggaggaaatggatgtcgcgttaggtcaggaagtaggatat
agcatccgtttcgaagattgtagttctccaaaaactgtattgaagtacatgaccgatggt
atgcttcttcgtgaaggtatgtccgaccctatgttggatgcataccaagtgatcttgctg
gatgaagcacacgaaaggactttagctactgatttattgatgggtgtgttaaaagaagtg
attaaacaaagaccagatttgaaacttgtgattatgagtgcaacattagatgctgggaaa
tttcaacagtatttcgataatgcacctttaatgaatgtacctggcagaacgcatcccgtc
gaaattttttatacacctgaacctgaaagagattacttagaggctgctatcaggacagtt
attcagatacacatgtgcgaagaagtagcaggggatttattattatttttaactggccag
gaagagattgaagaagcatgtaagagaatcaaaagagaaatggataatttaggtccagaa
gtaggtgaattgaaatgcataccattgtattctacactgcccccaaatcttcaacaaaga
atattcgaaccagcaccgcccacaaaaccaaatggtgctatcggtaggaaagtagtagtg
tcaactaatatcgcggaaacatcattaactattgatggtgttgtatttgtaattgacccc
ggttttgcaaaacagaaggtgtataatcctagaattcgcgtagaatctcttttagtatct
cccattagtaaagcttcctctaaacaaagagcaggtagagccggtcgtacaagacctggc
aaatgttttagattgtacacagaaaaagcgtataaaaatgaaatgcaggagaacacttac
cccgagatattaaggtcaaatcttggcagtgttgtattgcaactgaagaaacttggtatt
gacgatttggtacattttgacttcatggatcctcctgcaccagaaactcttatgagagca
ttagaacttctaaattacttggccgcgctagatgacgatgggaatctaacagatctgggc
gctgtaatggcggaatttccattagatccccaattggcaaagatgctgatcgcatcctgc
aatcacaactgcagtaacgaaattctcagcatcaccgctatgctttcagtcccacagtgt
tttgtgaggccaaatgaatcaaagaaggctgcggatgatgctaaaatgcgatttgcacac
atcgacggtgatcatttgacattattgaatgtgtatcatgcattcaaacaaaatttcgaa
gacccacaatggtgttacgataatttcgttaattaccggtcattgaaaagcggcgacaac
gtcagacagcagttgagcagaataatggacagattctgtttaaagcgtacctcgacggat
tttacgtcgaaagattattacaccaatatcagaaaggcgctggtgaacggcttctttatg
caggttgctcacttagaaagaaccggtcattatttaaccatcaaagataatcaaattgta
cagcttcatccgagcagttgtttagatcataaacctgaatgggtaatttataacgaattc
gtgcttacgactaagaattatattagaacagttactgacatcaaacctgattggttgcta
aagatagcgccgcaatattatgatttacaaaacttcccacaatgcgaagcaaagagacaa
ttggaagtaatccaatcgaagttagactcgaaacagtatcaagaaggattctaa
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integrated database retrieval system
