Nomia melanderi (Alkali bee): 116433793
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Entry
116433793 CDS
T07404
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116433793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nmea03041
]
116433793
Enzymes [BR:
nmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116433793
Spliceosome [BR:
nmea03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
116433793
Complex C
U5 SnRNP specific factors
116433793
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
HTH_61
Motif
Other DBs
NCBI-GeneID:
116433793
NCBI-ProteinID:
XP_031848149
LinkDB
All DBs
Position
Unknown
AA seq
2134 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKVKRQKRDEAQYDFARMKGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDKLKEKEKKKETELLLGLLAEERFALLVNLGKKIT
DFGSDEKNTTNEENIDETYGINVQFEESSEEDDEDVYGEIRENDDEGDEGEEANDDRAIH
AENLGSAEEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLAVLKDAGDDRDC
ENQLVLLLGYDCFDFIKQLKKYRHTIAYCTMLASSQSESERQKIRNKMNDDPILAKILRQ
LDTGKGDDDADETMEARAQRKRREENEDTGGPGGQVQGTRNLIDLEDLIFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFADNEKLHPIEQLPKYVQPAFEGFKTLNRIQS
RLYQTALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINSDEFKIIYVAPMRS
LVQEMVGTFGKRLSTYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLIGLSATLPNYQDVAAFLR
IKPETGLFYFDNSFRPVALEQQYIGITEKKALKRFQVMNEIVYEKTMEHAGRNQVLIFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKMSDMLNAEIV
LGTIQNIRDAVTWLGYTYLYIRMLRCPNLYGISHDKLKEDPLLELHRADLIHSAAVGLDR
SGLIKYDRKSGNFQATELGRIASHYYCTHDTMATYNQLLKRTLSEIELFRVFSLSGEFKH
INVREEEKLELQKLMERVPIPVKESIEEASAKVNVLLQAYISQLKLEGFALMSDMVFVTQ
SASRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKK
NFPWERLYDLGPNEIGELIRVPKLGKTIHKYIHQFPKLELSTHIQPITRSTLRVELTITP
DFQWDEKVHGASEAFWILVEDVDSEVILHHEYFLLKAKYAVDEHLIKFFVPVFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNSKFEGIYTDKFP
QFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTTVAEFAVLRLLIQNPEGRCVYMVSKEALA
ELVYADWSIKFNQLLGRKVVLLTGETGTDLKLLAKGQIIITTADKWDVLSRRWKQRKNVQ
NIQLFIVDELQLIGGEEGPVLEIACSRARYISSQLDKPTRVIALSASLADAKDVAQWLGA
PAAATFNFHPSVRPVPLELHVQGINITHNASRLAAMAKPVYNAILRYATHKPVIVFVPTR
RQARLTAIDLLTFTAAEGQPSRFFHAEEADIKPFLDRMTDKTLKETLSQGAAYLHEGLSA
DDRRLVEQLFDSGAIQVAIVTRDLCWDLSINCHLVVVMDTQCYNGKTHAYEDYPITDVLQ
MVARANRPLEDDDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIE
NKQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLSDLEQAKCVAVED
EMDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYETVPVRQREEN
LLRSLAARLPHAPQATRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLSKAVRLIQAC
VDVLSSSGWLAPAVAAMELAQMVTQAMWSKDSYLKQLPHFTSETIKRCTDKGVETVFDVM
ELEDDDRNRLLQLSETQMADVAKFCNRYPNIEMSYEVQDKDKLRSGGTVNVIVQLEREDE
VTGPVVAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPAPGQHSYTL
YFMSDAYLGCDQEYKFTINVGEYESDASSGSESD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgctgcagcgagacaattgcagtatgagtataaagctaattctaatcttgtt
ttacaagctgatgtacgattaatagaaagacgaagtagagatgaggctactggtgaggtt
atgtcacttgttggaaaacttgatggaacacgtatgggtgacagagcacaacgtactaag
ccaggaaaagcagaagaacgaaaagtcaaacgtcagaaacgagacgaagcacaatacgat
tttgcacggatgaaaggagcaacattgctttctgaaggtgtggatgagatggttggaatt
gtttaccgtccaaaaacacaagaaacacgtcagacatatgaagtactattgagttttatt
caagaagctttaggagatcaaccaagagatatcttatgtggcgctgctgatgaagtatta
gcagtattgaaaaatgataaacttaaagaaaaagagaagaagaaagaaacagaattacta
ttaggtttattggcagaagaaagatttgcgttgttagtaaatcttggaaagaagataaca
gactttggcagtgatgaaaaaaacactacaaatgaagaaaatattgatgaaacatatgga
attaatgtacaatttgaagaaagcagtgaagaagatgatgaagatgtttatggagagatc
agagaaaatgatgatgaaggagatgaaggtgaagaagctaatgatgatagagcaattcat
gctgaaaatctaggcagtgcagaggagatgaaaaaagagaaaccattgcatcctttagat
atagatgcatattggttacaaagaagattgagtagaatttatgatgatgcaatggtttca
caagcaagagctgcggaagttttagcagttttgaaagatgccggcgatgatcgtgattgt
gaaaatcagttagtactcttattgggttatgactgtttcgattttattaaacaactgaaa
aaatataggcacacaattgcttactgtactatgctggcatcttcacagtctgaatcagaa
cgccaaaagattcgaaataaaatgaacgatgatccaatattagcaaaaattttacgtcag
ttggatacaggtaaaggtgatgacgatgctgatgaaacaatggaagcaagagcacagcgt
aaaagaagagaagaaaatgaagatactggaggtcctggtggtcaggttcagggtacaaga
aatctaatagatttagaagaccttatatttgcacaaggaagtcactttatggcgaataaa
cgatgtcaattacctgacggtagtttcagaaaacaacgaaaagggtatgaagaggttcat
gttccagcattaaaaccaaaaccgtttgcagacaatgagaaacttcatccgattgaacag
ttaccgaagtatgtgcaaccagcatttgaaggctttaaaacgttaaatcgaattcaaagt
cgtctgtatcaaacggcattggaaagtgatgaaaatttattgctttgcgcgccgacaggt
gcaggtaaaactaacgttgctcttctgtgcatgatgcgtgaaattggcaaacatataaac
gcagatggcacgattaacagtgatgagttcaaaataatctatgttgcaccgatgcgttcg
ttggtacaagaaatggttggaactttcggtaaacgattatctacgtataacttaactgtg
tcagaattaactggtgatcatcaattgacacgagaacaaatagctgcaactcaagttata
gtatgcactcctgaaaagtgggatattataacaagaaaaggaggcgagaaaacttttact
tcgttagtcaggttgattattattgatgaaattcatttattacatgacgaaagaggacct
gtcttagaggctttggttgctagaacaattcgaaatattgagacaacgcaagaagacgta
agattaattggtctttcagctacattacctaattatcaagatgtagctgcatttttgcgt
ataaagccagaaacaggtttattttactttgataatagttttagacctgtagctttagaa
cagcaatatattggtatcacagagaaaaaggcactaaaacgttttcaagtaatgaatgaa
attgtttatgagaaaacaatggaacatgcaggtagaaatcaagttctcatctttgtacat
tcacggaaagaaactggaaaaacagcacgtgctattagggacatgtgtttggaaaaagat
acattaggacagttccttagggaaggatccgcatctatggaggttttaagaacagaagct
gaacaagttaaaaatcaagaacttaaagacttgctgccttatgggtttgctattcatcat
gctggtatgacgagagtggatcgaaccttggttgaagatctctttgccgatagacatata
caagttctagtctccactgctacgttagcttggggagttaatttaccggcacataccgtt
attattaaaggaactcaagtttataatccggaaaagggtagatgggttgaattgggtgca
ttagatgtattgcagatgttgggtagagccggtcgtccccaatacgacacaaaaggagaa
ggcattcttatcacaaatcacagtgaattgcaatattatttatctcttttaaatcagcaa
ttacctattgaatcacaactgatcagtaaaatgtcggacatgttaaatgcagaaattgtc
ttgggtactattcaaaacattcgagatgccgttacttggttgggatatacatatttgtat
attagaatgcttcgctgtccaaatctgtatggcataagccatgataaattaaaagaagac
ccattacttgaattacacagagcagatcttattcattccgcagcagtaggcttagatcgc
agtggtttaataaaatatgatcgaaagtcaggaaatttccaagctactgaattgggtcga
atagcgtctcattattactgcacgcatgatactatggctacatataatcagctactgaaa
cgtactttaagcgaaattgaactgttcagggtattttcattatccggcgaatttaaacat
ataaatgttcgagaagaagaaaaattagaattacagaagttaatggaaagagtacctatc
ccggtgaaagaaagcatagaagaagcaagtgcgaaagttaatgtacttttacaagcgtac
atttctcaactaaaactggaaggatttgcgcttatgtcagatatggtatttgttacacag
tctgcatcaagattaatgagagcaatttttgagattgttttgtttcgcggctgggcacaa
ttagctgataagtgtttatcattgtgcaaaatgatagataggagaatgtggcaatcaatg
tcccctttgagacaattccgtaaaatgccagaagaaattgtgaaaaaaatagaaaagaag
aattttccatgggaaaggctgtatgatcttggaccaaatgaaattggggaattaattcga
gtacctaaattaggtaaaactattcataaatatattcatcaatttccgaaattagaatta
tcaacacatattcaaccgataacgcgttctacattaagagtagaactaactattacaccc
gattttcaatgggatgagaaagtacatggcgcttcagaagcattctggattttagttgaa
gatgtagattctgaagtaatacttcatcacgaatattttctattgaaagccaaatatgcc
gtagatgaacacttaatcaaatttttcgtacctgtttttgagcctttaccaccacaatac
tttttacgagttgtatccgatagatggatcggtgcagaaactcaattaccagttagtttc
cgtcacttaatccttccagaaaagaatttaccaccaactgaattgcttgatttacagccc
cttccaattactgccttgcgcaattctaaatttgaaggtatctatacggataaatttcca
caatttaatccaattcaaacacaagtattcaatgctgtttataattcagatgataatgtg
tttgttggagcacctacaggttcgggaaaaacaacagtagcagaatttgcagtattacgt
ttgctaattcagaatccggagggtagatgtgtgtatatggtcagtaaagaagctctagca
gaattggtatatgcagattggtcaataaaatttaatcaacttttgggcagaaaggtggta
ttgctaactggtgaaacaggtacagatcttaaattgctcgcgaaaggacaaattataatt
acaactgcagataagtgggacgttttgtcacgaagatggaaacaaagaaagaatgtacaa
aatattcaactttttattgttgatgagcttcaattaattggcggcgaagaggggcctgta
ttggaaatagcatgctcaagagctcgttatatttcttctcaattggacaaaccaaccaga
gttatagcattatcagcttcacttgcagatgctaaagatgtagctcagtggttaggtgca
cctgccgcagcaactttcaattttcatccatctgttcgacctgtacccttagagctacat
gtacaaggaataaatattactcataatgcatctagattggctgctatggcaaaaccagta
tacaatgcaatattgagatacgctactcacaaaccagttattgtttttgttcctacacgc
cgccaagctagattgacagctattgatttattgactttcactgcagctgaaggacaacct
tcccgattctttcacgcagaagaagcggatattaaaccatttctcgataggatgactgac
aaaacattaaaggaaacgctttcgcaaggagctgcttatcttcatgaaggattatctgct
gatgacagacgccttgttgaacagctgtttgatagcggcgctattcaagtagcaattgtt
acaagagatctttgttgggatttatctattaattgtcatcttgtagttgttatggacact
cagtgctataatggaaaaacacacgcttacgaagattacccaattacagatgtgttgcaa
atggtagctcgagcaaatcgtccattagaggatgatgatgctaaatgtgttctactttgt
cagagttcaaagaaagatttctttaaaaaattcctgaacgaaccgttgcctgtagaaagt
catttggatcacagactgcacgatcattttaatgcggaaatagtaacaaaaacgattgag
aacaaacaagatgcagttgattatctcacatggactttcttatatagacgacttacacaa
aatccgaattactatggattacaaggtgttacgcacagacatttgtctgatcatttgtct
gaattggttgaaagcacattaagcgatttagaacaagcgaaatgtgttgctgtggaggat
gagatggatactttaccattaaatcttggaatgattgcagcttattattatatcaattat
gcgacaattgaattattcagtctttctttaaataataaaaccaaaattagaggtttgtta
gaaattatttcagcagcagcagaatatgaaacagtaccagttagacaaagagaagaaaat
ttgttacgaagtttagcggcacgtcttccccatgctccgcaagccacaagaatggccgat
ccacatgtaaaagcacagcttctattacaagcgcatttgtctcgaatacaactcggccca
gagcttcaaaaagatacggaattagtgttaagcaaagctgttaggttaatacaagcttgc
gttgatgttcttagttcctctggttggctggcaccagcagttgccgctatggaacttgca
caaatggttacacaagcaatgtggtctaaagattcttatttaaagcagttaccgcatttt
acttctgaaacaattaagcgttgtaccgacaaaggagtggaaactgtatttgatgtaatg
gaattagaagatgatgacagaaatcgtcttttacaattgtctgaaacacagatggcagat
gttgccaaattttgtaatcgttatcccaacattgaaatgtcctatgaagttcaagataaa
gataaactgcgtagcggtggcaccgtgaatgttattgttcaacttgaaagagaagatgaa
gtaactggaccagttgtggcacctttctttccacagaagcgtgaagaaggatggtgggtg
gttattggtgatccaaagactaactctctgctgtctattaaaagattaacgttacagcag
aaagcaaaagttaaacttgattttgtagctcctgcccctgggcaacattcttacactttg
tattttatgagtgatgcttacttgggatgcgatcaagaatataaatttaccataaatgta
ggagaatatgagtcagatgcaagttcggggtcagagtcagattaa
DBGET
integrated database retrieval system
