Nomia melanderi (Alkali bee): 116433890
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Entry
116433890 CDS
T07404
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116433890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116433890
03041 Spliceosome [BR:
nmea03041
]
116433890
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116433890
Spliceosome [BR:
nmea03041
]
Complex B
Other components
Prp19-related factors
116433890
Complex C
116433890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
RPN7
ARM_TT21_C
TPR_10
DHR-2_Lobe_A
PPR
SNAP
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
116433890
NCBI-ProteinID:
XP_031848342
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MMLERKDLEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALK
ELPGSYKLWYNYLRQRVSQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTD
QCYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEE
YIEYLISIERLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDA
IIRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQF
EELSLSKRMEEAAKDPNEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKR
VMLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIGDARVVFEKATH
VPYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKS
LKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENKYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPLKYAKVLYLLYAKLE
EEHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEEN
TREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREM
LRIKRSVQAMYNTQVNMMSAQMLNNATNPPADVPVDAMRLLDSKTPNADNGPTYKDSIKF
VRGVTEKDGKAETQVNNPDEIDIDIDDDVNDNDADIEEDIPIEKQMIPSQVFGSLKTAIG
EDD
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgatgttggaacgcaaagatttggaaggaaacttatatgttttcaatgaagaagattta
ccatacgaggaagaaattttgagaaatccttattctgttaaacattggcagcgttatata
gaccatttaaaaagtacaaaaagtagtaatttaaacattgtatatgaaagagcattgaaa
gagcttcctggaagttacaaattatggtacaattacctgcgtcaacgtgtaagtcagtta
aaaggaagatgtataacagatcctctttacgaagatgtgaataatgcgttcgagagagca
ttagttttcatgcataagatgcctaggatttggatggattattgtacattaatgacagat
caatgttatattactcgtactcgacaagtatttgatagagcacttagagctcttcccatc
acacaacatcatcgcatatggccattgtatattgaatttctaaaaaagcacaatgtttat
gagactgcagtaagggtttttaggagatatttaaagctagctccagaagatacagaagaa
tatatagagtatctgatatctattgaaagacttgatgaagcagctgtgaaacttgcacaa
attgttaatcaagatgattttgtctcaaagcatgggaaatctaatcatcaattatggaat
gaattatgtgatttaatatcaaagaatccttctaaaataaagtctctcaatgtagatgcc
attatcagaggtggtctaagaagatatactgatcaattaggtcctctttggaactcatta
gctgactattatgtccgcagtggtttgtttgaaagggcaagagacatttatgaggaagca
atacaaacagtaactactgtcagagatttcacacaagtttttgatgcttatgcacaattt
gaagaacttagccttagtaaacgtatggaagaagctgcaaaagatcctaatgaagatgat
gatatagatttggaattgagattagcccgatttgaacacttaatggagaggcgattatta
ttattaaattctgtattacttagacaaaatccacataacgtacaagaatggcataaacga
gttatgctttatgaaggacaaccacatgagattattaatacatacacagaagctgtacag
actgtacaaccacaattagcagtaggaaaattgcatactttatgggtggcattcggtaaa
ttttatgaagaaaatggacaaataggagatgctagagtagtttttgaaaaagcaactcat
gttccttacactaaagttgacgaccttgcctctgtgtggtgtgaatgggcagaaatggaa
atcagacatgggaattacaaagaggcgctaaaacttatgcaccgagccaccgccatgcca
ttccgtaaagtggcgtatcacgatgaaacagaaactgtacaaatgagattgtacaaatcc
ttgaaagtttggtctatgtacgccgacctagaagaaagttttggaacgtttaagacatgc
aaagcagtctacgacaaaattatagatttaaaaattgccacaccgcaaattattattaat
tatggtctctttttagaggaaaataaatattttgaagaagccttcagagcttatgaaaag
ggaattgcgcttttcaagtggcctaatgtttatgacatatggaatacataccttacgaaa
ttcttgaaacgctatggcggtactaaattggaaagaacgcgagatttgtttgaacagtgc
ttagaacactgtccgctaaaatatgctaaagttttatatttattgtatgcaaaattagaa
gaggaacatggcttagctaggcatgcaatgtctgtctatgagcgggcaacaagtgccgtt
cttcctgaagaaagatttgagatgttcaatatatacataaagaaagcagcggacatttat
ggtgtaccaaaaacgcggcagatctacgagaaagctattgaagttcttaatgaagaaaat
acaagggaaatgtgtctacgatttgcagaaatggaaacgaaattaggggaggtcgacaga
gctagagcgatatatgcacattgcagtcaaatctgtgacccaagagtaacgtcgaatttc
tggcaaatatggaaagagtttgaggtgagacacggcaacgaagatacgatgcgtgaaatg
cttcgaattaaacgtagcgttcaagctatgtacaatacacaagtgaatatgatgtctgct
caaatgttgaacaatgcaacaaacccgcccgccgatgtaccagtggatgccatgcgactt
ttggatagtaaaacaccgaacgcagataatggccctacatacaaggatagtattaaattc
gttcgtggtgtaacggagaaggatggcaaagctgaaactcaagtgaacaatccggatgaa
atagatattgatatagacgacgatgtcaatgacaatgacgcagacatagaggaagatata
cctattgagaaacaaatgataccatcgcaagtattcggtagtttaaaaacagctataggt
gaagacgattaa
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