Nomia melanderi (Alkali bee): 116434979
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Entry
116434979 CDS
T07404
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116434979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116434979
Enzymes [BR:
nmea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
116434979
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116434979
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_1
R3H
Motif
Other DBs
NCBI-GeneID:
116434979
NCBI-ProteinID:
XP_031849864
LinkDB
All DBs
Position
Unknown
AA seq
583 aa
AA seq
DB search
MEVTRLNFQEILSELDDVLKNASFLAIDGEFTGLNSGPDAGAFDIPAQYYTKLRAGSMDF
LLIQFGLSVFTFDTHTRKYNQRSYNFYVFPRPLNRAAPDSRFMCQASSVSFLIAQGFDFN
KLFNLGIPYLTTSEEEKLLKRLEERQKARDEVPELIPISDEDKPQITNICSRIEEFIASE
TKELIIDKCNAYIRRLVHQEVRLRWPNVLRVESRSDCAGQCLVVQKSGTKQEEEQKEVER
REREKLEIKEAAGLSTLLRKIADSGKLIVGHNMLLDICHIIHKFFGPLPESYSEFKSLVH
SLFPRLLDTKILCQSQQFKEKIPSSNLNELLESVSKSPFEISEIIPIDGRSYSTSAEKCH
EAGYDAYITGICFIALCNYLGRLQKPEIPIVLPESPLLNPFLNKLLIARLKDFPYISLVG
KDPNPSRDHVFHLTFPKEWKYNDISQLFSPFGGVYVSWLSDTSAYVALNRREQAISAAKS
LRKKSGTYKIQKYAEYQASLENLNRGERKRKLSSLYISYSTNETAEKESEEKATPTSETN
AADADDGWKVATGKRHRKWKNETNVEVGRDPVKKKTFEETSWD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaactcgattaaattttcaggagattctgtcagaattggatgatgttctaaaa
aatgcatcatttcttgcaattgatggagaattcacaggactaaattcaggtcctgatgct
ggtgcttttgatatacctgcccagtattacacaaaattaagagcaggttcaatggacttc
cttcttatacaatttggcctgtctgtttttacatttgatacacatacacgcaagtacaat
caacggtcgtacaatttttatgttttcccacggcctttaaatcgcgcagcgccagattca
agatttatgtgtcaagcatcctctgtatcattcttgattgctcaagggttcgatttcaat
aaactttttaacttgggcattccatatttaacgacgagcgaagaagaaaagttattaaag
cggttagaagagaggcaaaaagcacgcgacgaagtaccagagttgatacccatatcagat
gaagataaacctcaaatcacaaacatttgctcaaggatagaagaattcatagcttctgag
acgaaagaattgataatagacaaatgtaatgcatatattaggcgacttgtgcaccaagaa
gtaagattacggtggccaaacgtattaagagttgaaagtagatcggattgtgccggacaa
tgtcttgtagtgcaaaagtcaggaactaagcaagaagaagaacaaaaggaagttgaaaga
agagaaagagaaaagttggaaattaaagaagcagctggtttaagtacactcctgagaaag
attgctgattctggtaaattaatagttgggcataatatgttattggatatttgtcacata
atacataaatttttcggaccattaccagaaagttattcggaatttaaatctcttgttcac
agtttgtttcctagacttttagatacaaaaatactttgccaatcacaacagttcaaggaa
aagataccttcatcgaatttaaatgaattactagaaagtgttagcaaatcgccgtttgaa
atttcagaaataatacctattgatggtagaagttattccacatcggcggagaaatgtcat
gaggcaggttacgacgcttatatcactggaatatgtttcattgcattgtgtaattatctt
ggtcgtttacaaaagcccgaaattcctatagtccttccggaatcacctcttctcaatcca
tttctaaataaacttcttatagcaagattaaaagactttccttatataagtttagtagga
aaagacccaaatcctagtagagatcacgtgttccatttaacattcccgaaagaatggaag
tataatgacatttcgcaattgtttagtccatttggaggtgtgtatgtgtcatggttatcg
gacacatccgcgtatgtagctctgaatcgtcgagaacaagctatttcagctgcgaagagt
ttacgtaaaaaatcaggtacatataaaatacaaaagtatgcagagtaccaagcatcgttg
gagaatcttaacaggggagaacggaaacgaaagttaagtagcttatatataagctattcc
acgaatgaaactgccgagaaggaaagcgaagaaaaggctacgccgacgagcgagacgaac
gcggcagatgctgacgacggctggaaagtggcgacaggtaaacgccaccgcaaatggaag
aacgaaacgaatgtcgaagttggtcgagatcccgtgaagaagaagacatttgaggagaca
tcctgggattaa
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