Nomia melanderi (Alkali bee): 116435152
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Entry
116435152 CDS
T07404
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
nmea
Nomia melanderi (Alkali bee)
Pathway
nmea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nmea00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116435152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmea03021
]
116435152
03019 Messenger RNA biogenesis [BR:
nmea03019
]
116435152
Transcription machinery [BR:
nmea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116435152
Messenger RNA biogenesis [BR:
nmea03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116435152
U7-dependent histone pre-mRNA processing factors
116435152
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
UBA_Crd2
Motif
Other DBs
NCBI-GeneID:
116435152
NCBI-ProteinID:
XP_031850273
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MDPRIHRRSESEKGPGDLIVEWLNEASLNPAEDVKVTNLCKVQEILINKEPQLLPLYLDE
VLQFSLDRNAEVKKTVTGFIEDAGVKQPEIIPRVVQILLRLVSDESSAVAKRALRASGRI
LRAALKWISVATTITPEMEVAWGQLSALKIQIINMIDSDNDGIRTQAVKFLEGVVLIQTY
PDPDSPKKSDDFSLEDIPLTLKIARRRKLEEEANDVMDLLIKFHGSPHVSSVNLMTCMGS
LAFIAKSRPQFMPGVIQALQRLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPASIEFAS
TIAKQLTQLGAKEQEIIKSYPKPEDIRRMKKRQQEAAATSAAKRVKVETPLIPDEPEVVP
TPVPPPKLPELLELSESFISERLSVEIATDLVMDSMAWVPDTMTTIFQREYQPTSTTDIS
IQRQTIAKLLATQIKQAKAKKKKEAKDEDAVMEDLVKNPTISVAEAKRERKREKDREKEK
EAKASLEAHEKSLAKARNRLKALKLSEVTKPLPKEVKEKMLLMAVNRILSSEKTAVFGGV
AAIRSKILTTLAATFNPYIKEAVLRYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLCT
KPQEAPHQAYNFLLCTLVSAIDLVQGKDRDTLLNRLYLEAPLITEDAVEALKMVSSDETR
GLAPLQLLKEMVIRRPTKQLVFLNVLLCHTGHENNTIREAAIQLVCELYSRSELSKLIEE
YAVLYLGFLRLHTPPEIVFGQDRGRPQVETQWTESTTRACLGLYLALLSEHQDLIHELAR
VYTSMSADVKRMVLRLVEGPVRSLGMGSPQLLALVENCPKGAETLVTRIIHILTEKSAPS
VELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTHN
NESGVPHTSPITPAELLIALHNIDSSKAELKTIIKATSLCFAEKQVYTQETVAVVMQHLM
EMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTQPQS
FAVILQLPPTQLAEALKMASNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKSPCDMHDE
FDIAPPGDYPIEQKPDTMETDVSEPAPPGLD
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggatcctcgaatacataggagatcagagtcggaaaagggaccgggtgatttgatagtt
gaatggttaaatgaagcgtctctaaatccagcagaggatgtgaaagttacaaatttatgt
aaagttcaagaaattttaataaacaaagaaccacagttacttccattatacttggacgaa
gttttgcaattttcattagatagaaatgcagaagttaagaaaacagtgacaggtttcata
gaggatgctggagtaaaacagccagaaataattccacgtgtagttcaaatacttctaaga
ctagtctctgacgaatcatcagctgtagctaaaagagctttaagagctagtggcagaata
ttgagggctgcattaaaatggatatctgttgccactacaattactccagaaatggaagtg
gcatggggtcaactcagtgctcttaagatacagattataaatatgatagatagtgataat
gatggcattagaacacaagctgtgaagtttcttgagggtgtagttttaatacaaacatac
cctgatccagactcaccgaaaaaatcagatgatttttctttggaagatattccactaaca
ttaaaaatagctcgtagacgaaaactagaagaagaagctaatgacgtaatggatttatta
attaaatttcatgggtcccctcatgttagcagtgtcaatttaatgacatgcatggggtct
ttagcatttattgctaaatcaagaccccagtttatgccaggagtaatacaagctttgcaa
aggctacaacatgacttaccaccgacattgtctgattctcaagtaactagtgtacaaaaa
cagttaaaattaactttattaggacttatgaaacaccctgctagtatagaattcgcgtct
accatagctaaacaattaacacaattgggagcaaaagaacaagaaataattaaatcttat
ccaaaaccagaggacatccggcgtatgaagaagcggcaacaagaagcagctgctacttct
gctgcaaaacgtgttaaagttgaaactcctttaataccagatgaaccagaagttgtgcct
actcctgttcctcctccaaaattaccagaactattggaactttcagaaagttttatttct
gaaagattaagtgtggagattgctacagatttagtaatggacagcatggcgtgggtacct
gacacaatgacaacaattttccaaagagaatatcagccaacttcgacgaccgacattagt
attcagcgacaaacgattgctaaattattagccacgcaaataaaacaagctaaagcgaag
aaaaagaaagaagctaaagatgaagatgcagttatggaggatttagtaaagaatcccact
attagtgtagcagaagcgaagcgagaaagaaaacgtgaaaaagatagggagaaagaaaaa
gaagcaaaggcttctttagaagctcatgaaaaatcgcttgcaaaagcaagaaatcgtttg
aaagctttgaaattgtctgaagttacaaagccgttaccaaaagaagtgaaagaaaaaatg
ttactgatggcagttaatagaatcctctcatccgagaagacagccgtatttggtggcgtg
gcagccataaggtctaaaatcttaacaaccttagctgcaacatttaatccgtacattaag
gaggcagtattacgatacattaccgacgatatgagaaatcgtttggacttagctttagga
tggttatatgaagaatacgcgttactccaaggatttcaaagaaggactactctatgtaca
aagcctcaagaagcaccacatcaggcttataactttctgttgtgtactttagtgtcggca
atagatttagtacaagggaaagatcgagacacactcctgaacaggttatatttggaagct
cccttaattaccgaagatgccgtggaggccttgaaaatggtatcgtctgatgagaccaga
gggttggcacctctgcagttattgaaagaaatggttattcgtagacctacgaagcaatta
gtttttttaaatgtgttattatgtcacactggtcatgagaataacactataagggaagct
gcaatacaattagtttgtgaactatatagtcgttctgagttaagtaaacttatagaagag
tacgcggttctttatttgggtttcttacgacttcatactccacccgaaatcgtatttgga
caggatcggggtagaccgcaagtagaaacccagtggacagaatcgactacgagagcgtgc
cttggattatatctcgcgctattgagcgaacatcaagatttgatccatgaattggcaaga
gtttatacatcgatgagtgcagatgtaaaacgtatggttcttcgattagtggaaggacca
gtgaggtccctaggaatgggcagtcctcaattattagctttagttgaaaattgtccaaag
ggagcagagacactggttacaagaatcattcatattcttacagaaaaatctgcaccaagt
gttgagttggttgcaagagttcgagagctttatcaaaccagggtttccgatgttcggttt
ttaatacccgtattgaatggtctaacgaaaaaggaagtaatagcggcccttccaaaactt
ataaaactaaatcccattgttgttaaagaggtgtttaataggttactgggaactcataat
aatgaaagtggcgtacctcatacatctcccatcacacctgctgaattgttaatagcctta
cataatatagattcaagcaaagcggaattaaaaacaattataaaagctacgtctctatgc
ttcgcagagaagcaagtgtatacgcaggaaactgtggccgttgtaatgcaacacttgatg
gaaatgacaccgttacctacgttattaatgcgtacagtaatacaaagtttagctttatat
ccgaggttaagtggatttgttatgaatatacttcaacgattgatccttaaacaagtttgg
aagcagccaaaagtctgggaaggttttgttaagtgttgtgaacgaacgcaaccacaaagt
tttgcagtaattttacaacttcctccaactcagttggctgaagcattaaagatggcgagt
aatttacgcgccccgttattagcgcacgtcgaggccttcgctgaaaatcagaaagcgcac
attccacagtcgataatggatgttattcagggtaaatcaccttgcgacatgcatgatgaa
tttgatattgcaccacccggtgattatccaattgaacaaaaaccagatacaatggaaact
gatgtttcagaaccagcacctcctggtttagattag
DBGET
integrated database retrieval system
