Numida meleagris (helmeted guineafowl): 110387115
Help
Entry
110387115 CDS
T06015
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110387115 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nmel03041
]
110387115 (SNRNP200)
Enzymes [BR:
nmel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110387115 (SNRNP200)
Spliceosome [BR:
nmel03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110387115 (SNRNP200)
Complex C
U5 SnRNP specific factors
110387115 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Motif
Other DBs
NCBI-GeneID:
110387115
NCBI-ProteinID:
XP_021230602
LinkDB
All DBs
Position
21:3253316..3273162
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAETVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGDPLLEQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSL
SSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTIAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFMDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPII
VFVPSRKQTRLTAINILTTCASDVQRHRFLHCAEKDLVPYLDKLNDNTLKETLVNGVGYL
HEGLTAMERRVVEQLFSSGAVQVMVASRSLCWGMNIAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEDRNALLQLSDAQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
THNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSESD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgctcgcagcctgcagtatgagtacaaggcgaactccaacctcgtg
ctccaagctgaccgctctctcattgaccggacgcggcgtgatgagccgacgggcgaggtg
ctgtccctggtgggcaagctggagggcacccgcatgggcgacaaggcgcagcgcaccaag
ccgcagatgcaggaggagcgacgcgccaagagaaggaagcgcgatgaggacaggcacgac
atcaacaaaatgaagggctacaccctgctgtccgagggcatcgacgagatggtggggatc
atctacaagcccaagaccaaggagacccgggagacctacgaggtgctgctgagcttcatc
caggcagcccttggggaccagccgcgagacattctgtgcggggctgccgacgaggtcctg
gcagtgctgaagaacgagaagctgcgcgacaaggagaggcgcaaggagatcgatctgctg
ctgggccagaccgacgacacccgctaccacgtgctggtgaacctgggcaagaagatcacg
gattacggcggcgacaaggaaattcagaacatggatgacaacatcgatgagacgtacggc
gtgaacgtgcagttcgagtctgacgaggaggaaggtgacgaggacatctacggcgaagtg
cgtgacgaggcgtccgatgatgacatggaaggagacgaagccgtcgtccgttgcaccctc
tcagccaaccttgtagcatcaggtgaattgatgagctcaaagaagaaggatctgcatccc
cgagacatcgacgccttctggctccagcggcagctgagccgcttctacgatgatgccatc
gtttcccagaagaaggcagatgaagtgctggagatcctcaagactgcgagcgatgaccgg
gagtgtgagaaccagcttgttctgctcctgggcttcaacacctttgacttcatcaaagtg
ctgcggcagcaccgcatgatgatcctctactgcactttgctggccagtgcccaaagcgaa
gctgaaaaagaaaggataatggggaagatggaagcagatcctgagctgtccaagttcttg
taccagttgcatgagaccgagaaggaggatctcatccgggaggagcgctctcgccgggag
cgtgttcggcagtcccggatggacactgacctggagaccatggatctcgaccaaggagga
gaggcgctggctccccggcaggtgctggacttggaggacctggtgtttgctcagggcagc
cacttcatggccaacaagcgatgccagctgcccgacggctccttccgcaggcagcgcaag
ggctacgaggaggtgcacgtgccggccctgaagccgaagccttttggctctgaagagcaa
ttggtttctgtggaaaagctgcccaaatatgcccaggctggatttgaagggtttaaaaca
ctgaaccgtatccagagcaaactgtaccgcgctgcgctggagtcagatgagaacctgctg
ctgtgcgctcccacgggagctgggaagacgaacgtggcgctgatgtgcatgctgcgagaa
atagggaagcacatcaacatggatgggaccatcaacgtggacgacttcaagatcatctac
atcgcacccatgaggtctttggtgcaggagatggtgggcagcttcgggaagcgcctggca
acctacggcatcaacgtggcggagctgacgggggatcaccagctgtgcaaggaggaaatc
agcgccacccagatcatcgtctgcaccccggagaagtgggacatcatcactcgcaagggg
ggagagcgcacctacacccagctggtgcggctcgtcatcctggatgaaatacacctgctg
catgacgaccgagggcctgtgctggagtctttggtcgccagagccatccgcaacatcgag
atgacgcaggaggacgtcaggctcgtcggcttgagtgccaccctccccaactacgaggac
gtggcgacgttcctccgggtggaccctgccaaaggcttgttctattttgataacagcttc
cgaccagtgcccctggagcagacctacgtgggtatcacagagaagaaagccatcaaacgc
ttccagataatgaatgagatcgtttatgagaagattatggagcacgcaggaaagaaccag
gtgctggtgttcgttcactccaggaaggagactggcaagacagcacgggccatcagggac
atgtgtctggagaaggacaccctgggcctcttcctgcgagagggctcggcctccaccgag
gtgctgaggacggaagccgagcagtgcaagaacctggagctgaaggacctgctgccctat
ggctttgccattcaccacgctgggatgacacgagtggacaggacgttggtggaggatctg
tttgctgacaaacacatccaggttctggtgtccacagcaacgctggcctggggggtgaac
ctccctgcccacaccgtcatcatcaagggcacgcaggtgtacagccctgagaagggacgc
tggacggagctcggtgctttggacatcctgcagatgctgggccgtgctgggaggcctcag
tacgacaccaaaggagaggggatcctcatcacatcccacggcgagctgcagtattacctg
tccctgctcaaccagcagctccccatcgagagtcagatggtgtcgaagctcccggacatg
ctgaatgcagaaaccgtgctgggaaacgtccagaacgcgaaggacgcggtgaattggctc
ggttacacctacctgtacatccggatgctgcgctcccccaccctctatgggatttcccac
gatgatttgaagggggacccgctgctggagcagcgccgcttggatctggttcacaccgca
gccctcatgttggacaagaacaacctggtgaagtacgacaagaagacggggaacttccag
gtgacggagctgggccgcatcgccagccactactacatcaccaacgagacgatgcagacg
tacaaccagctcctgaagcccaccctgagtgaaatcgagctgtttcgggtcttctcgctg
tcctcggagttcagaaacatcacagtgagggaggaggagaagcttgagcttcagaagttg
ctggagcgagttccgatccctgtgaaggagagcatagaggagcccagtgccaagatcaac
gtgctcctccaggccttcatctcccagctgaagctggaaggatttgctctcatggcagac
atggtgtacgttacccagtccgcggggcggctgatgcgcgccatcttcgagatcgtcctg
aaccgcggctgggcccagctcaccgacaagaccctcaacctctgcaagatgattgacaaa
cggatgtggcagtccatgtgccctctgcgccagttcaagaagctgcctgaagaagtggtg
aagaaaatcgagaagaagaatttcccgtttgaacggctctacgacctgaaccacaacgaa
ataggagagctgatccggatgcccaagatgggcaaaacaatccacaaatacgtccatctg
ttcccaaagctggagctctctgtccacctgcagcccattacccgctctaccctgaaagtg
gagctcaccattgcccccgacttccagtgggatgagaaggtgcacggctcatccgaagct
ttctggatcctggtggaggacgtggacagcgaggtgatcctgcaccacgagtacttcctg
ctgaaggccaagtacgcgcaggacgagcacctcgtcaccttcttcgtgcccgtgttcgag
ccgctgcccccgcagtacttcatccgggtggtgtccgaccgctggctctcctgtgagacc
cagctgcccgtttccttccgccacctgatcctccctgagaagtacccccctcccacggag
ctgctggatctgcagccgctgcccgtgtccgctctgcggaacagcgccttcgagagcctc
taccaggacaagttccctttcttcaaccccatccagactcaggtgtttaacaccgtctac
aacagcgacgacaacgtgtttgtgggtgcccccacgggaagcgggaagaccatttgtgct
gagtttgccatcctgaggatgctgctgcagaactcggagggacgctgcgtgtacatcacc
cccatggaggccctggcagagcaggtcttcatggactggtacgaaaagttccaggagcgt
ctcaataagaaagtggtcttgctgacaggagagaccagcactgacctgaagctgctgggc
aaagggaacatcatcatcagcacccctgagaaatgggacatcctgtcccggcgctggaag
cagcgcaagaacgtccagaacgtcaacctcttcatcgtggatgaagtgcacctcatcggg
ggcgagaacgggcccgtgctggaggtcatctgctcccggatgcgctacatctcctcgcag
atcgagcggcccatccgcatcgtggccctcagctcgtccctgtccaacgccaaggacgtg
gcacactggctgggctgcagtgccacctccaccttcaacttccaccccaacgtccgcccc
gtgcccctagagctgcacatccagggcttcaacatcagccacacgcagacccgcctgctc
tccatggccaagcccgtctaccacgccatcatgaagcactcccccaaaaagcccatcatc
gtcttcgtgccgtcccgcaagcagacgcggctcacggccatcaacatcctcaccacgtgc
gcctcagacgtccagagacacaggttcctgcactgcgcagagaaggacctggtgccctac
ctggacaagctgaatgacaacaccctgaaggagacgctggtgaacggggtgggctacctg
cacgaggggctgacggccatggagcggcgcgtggtagagcagcttttcagctctggagca
gtgcaggtgatggttgcctcccgcagcctctgctggggtatgaacattgcagcgcacctg
gtgatcatcatggacacgcagtactacaacggcaagatccacgcgtacgtggattacccc
atctacgacgtgctgcagatggtgggccacgccaaccgcccgctgcaggacgacgaaggt
cgttgtgtcatcatgtgccagggatccaagaaggatttcttcaagaaattcctctacgag
cccctgcccgtggaatcacacctggaccattgcatgcacgatcacttcaacgccgagatt
gtcaccaagaccattgaaaacaagcaggatgcggtggactacctcacttggacgttcctg
taccgcaggatgacgcagaatccaaactactacaacctgcaaggtgtgtcccacaggcat
ctgtccgaccacctctcggaactggtggagcagaccctcagtgacctggagcagtccaag
tgcatcagcatcgaggacgagatggacgtggctcccctgaacctggggatgatcgcagcc
tattactacatcaactacaccaccatcgagctcttcagcatgtccctcaatgccaaaacc
aaagtgcgagggctgattgagatcatctccaacgctgctgagtatgagaacatccctatc
cggcaccacgaggacaacctgctgcgccagctggcccagaaagttccccacaagctgacc
aaccccaaattcaacgacccccacgtcaagaccaacctcctgctgcaggctcacttgtcg
cgcatgcagctgagcgccgagctgcagtcggacacggaggagatcctcagcaaggcgatc
cggctgatccaggcgtgcgtggacgtcctgtccagcaatggctggctgagccccgcgctg
gccgccatggagctggcgcagatggtgacacaagccatgtggtccaaggattcctacctc
aagcagctgcctcacttcacctctgagcacatcaagcgctgcaccgacaagggggtggag
agcgtctttgacatcatggaaatggaggacgaggaccggaacgccctgctgcagctctcg
gacgcgcagatcgccgacgtcgcccgcttctgcaaccgctaccccaacattgagctgtcc
tacgaggtggtggagaaggaaagcatccggagtggggggcccgtggtggtgctggtgcag
ctggagcgtgaggaggaggtcaccggccccgtcatcgctcccctcttcccccagaaacgt
gaggagggctggtgggtggtgatcggcgactccaagtccaacagcctcatctccatcaag
cggctgacgctgcagcagaaggccaaggtgaagctggatttcgtggccccggccacgggg
acgcacaactacacgctgtacttcatgagcgacgcctacatgggctgcgaccaggagtac
aagttcagcgtggacgtgaaggaggccgagagcgacagcgaatccgattag
DBGET
integrated database retrieval system
