Numida meleagris (helmeted guineafowl): 110387441
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Entry
110387441 CDS
T06015
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel04510
Focal adhesion
nmel04512
ECM-receptor interaction
nmel04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110387441
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110387441
09142 Cell motility
04820 Cytoskeleton in muscle cells
110387441
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nmel00535
]
110387441
Proteoglycans [BR:
nmel00535
]
Extracellular matrix (ECM) proteoglycans
Others
110387441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110387441
NCBI-ProteinID:
XP_021231241
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Position
22:complement(5039922..5052332)
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AA seq
704 aa
AA seq
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MEGVSSPTCTAPLPAMARRGPALCLLLLHAACLCLAQLRGPPGEPGPRGPPGPPGVPGAD
GIDGDKGSPGAPGSPGAKGEPGAPGPDGPPGKPGLDGLTGAKGEPGPMGGAGPKGQPGLP
GPPGLPGPSLPGPPGLPGQVGLPGEIGVPGPKGDPGPDGPRGPPGPPGKPGPPGHIQGVE
GSADFLCPTNCPPGPKGPQGLQGLKGHRGRPGALGEPGQQGKQGPKGDVGASGEQGVPGP
PGPQGQRGYPGMAGPKGETGPAGYKGMVGTIGEAGRPGREGPKGPPGDPGEKGELGGRGI
RGPQGDIGPKGENGLPGIDGKDGTPGIPGVKGSAGQPGRPGPPGHRGQAGLPGPPGSKGG
PGDKGEVGARGQQGITGAPGLMGEPGPRGEQGPPGIPGLKGDRGERGPVGAPGEQGRAGP
KGEQGPPGIPGPQGLPGVKGDKGSPGKTGPKGGIGDPGVHGLAGVKGEKGESGEPGPKGQ
QGIQGELGFPGPSGDVGLPGVRGYPGPPGPRGLLGERGVPGMPGQRGVAGRDAGDQHIVD
VVLKMLQEQLAEVAVSAKRAALGGVGAMGPPGPPGPPGPPGEQGPHGPMGPRGVPGLLGA
TGQIGNIGPKGKRGEKGERGDTGRGHPGMPGPPGIPGLPGIPGHALDGKDGERGPPGVPG
DAGRPGSPGPVGLPGFCEPAACLGASAYASARLTEPGAVKGPLY
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggagggggtgtccagtccgacgtgcacagccccgctcccggccatggcccgccgcggc
cccgcgctctgcctgctgctcctgcacgctgcctgcctctgcctggcccagctccggggg
ccaccaggagagcccggcccacgaggcccccccggtccgccaggagtgccgggagcggat
ggcattgatggtgacaaaggctctcctggagcccctggctccccgggtgccaagggggag
cccggagccccaggtccggatgggcccccagggaagccgggcttagacggccttacagga
gccaaaggggagccggggcccatggggggggcaggaccaaagggtcaacctggactgccg
gggccgccggggctcccaggcccctcgctgccaggaccgcctgggctgccaggccaggtt
ggactgcctggggagatcggagtgccgggacccaagggtgatcctggacccgatggccca
cggggccctccaggccccccagggaaacccggccccccaggacacatccaaggagtggag
ggaagcgcagatttcttgtgcccaaccaactgcccgccaggtcccaagggcccccaagga
ctgcagggactgaagggacacagaggtcggcccggtgccctgggggagcctggccagcag
ggcaagcagggccccaagggtgacgtcggtgcctccggagagcaaggtgtcccaggccct
ccaggaccgcaggggcagcgggggtacccggggatggcgggacccaagggcgagacgggt
cctgctggctacaaggggatggtggggaccatcggcgaggccgggcggccgggcagggaa
ggccctaagggacctccaggggatccaggcgagaagggagagctgggcggccgcggcatc
aggggcccccagggagacattggccccaaaggggagaatggtctgcccggcattgatggc
aaggatggcacaccaggcatcccaggcgtgaagggctctgcaggacaacccggccgccca
ggacccccaggacaccggggacaagctggcttgccgggacccccaggaagcaaaggtggc
ccaggagacaagggtgaggtgggagctcgggggcagcaaggcatcaccggagccccgggg
ctgatgggtgagcccggcccccggggtgagcagggaccgccgggcatccccgggctgaag
ggtgaccggggggaacgtggccccgtgggagcccctggtgagcagggcagagcggggccc
aaaggcgaacagggccccccagggatcccaggaccccaaggcttgccaggagtcaaagga
gacaagggctccccaggaaagaccggccccaaaggcggcattggagaccccggtgtccat
ggcctcgcaggggtgaagggtgagaagggtgaatcgggagagccaggaccaaagggacag
caaggcatccagggcgagctcggcttccccgggccctcgggggatgtgggcttacctggc
gtgaggggatacccaggtccccccggcccacgggggctgctgggggagcgcggcgtgccg
gggatgccggggcagcgcggcgttgcgggccgggacgctggggaccagcacatcgttgat
gtggtgctgaagatgctgcaagagcagctggcggaggtggccgtcagcgccaagagagcc
gccctggggggagtcggtgccatgggcccccccggacccccggggcctccggggccacct
ggggagcaaggcccccacggacccatgggacctcgaggcgtccccggcctcctgggtgcc
accgggcagatcggcaacatcggacccaaagggaagcgcggggagaagggtgagcgggga
gacaccggccgtgggcacccggggatgccgggtccgccagggatcccaggtctccccggc
atccccggccacgcgctggatggcaaggacggggagcggggccctccaggtgtcccaggg
gatgctgggcgcccgggatcccccggccccgtggggttgccgggtttctgcgagccggcc
gcctgcctgggggcttctgcctacgcctcggcgcggctgacggagccgggcgctgtcaag
ggacctctgtactga
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