Numida meleagris (helmeted guineafowl): 110388864
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Entry
110388864 CDS
T06015
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03013
Nucleocytoplasmic transport
nmel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110388864 (UPF1)
03015 mRNA surveillance pathway
110388864 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmel03019
]
110388864 (UPF1)
Enzymes [BR:
nmel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110388864 (UPF1)
5.6.2.5 RNA 5'-3' helicase
110388864 (UPF1)
Messenger RNA biogenesis [BR:
nmel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110388864 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110388864 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110388864
NCBI-ProteinID:
XP_021234250
LinkDB
All DBs
Position
27:complement(3784436..3804388)
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AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQAQG
APGAGQGPAGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacggcccgagttcgcagaccctcaccttcctggacacggaggag
gccgagctgctcggcgccgacacgcaaggctccgagttcgagttcaccgacttcaccctc
cccagccagacccaaaccccgcccgggcctgggcaggcggggcccgggcaggcccaaggc
gctccgggagcgggccagggccctgcaggccccatcgaggcccaggtgaatggacctgac
ggcattctgcagaatggagcagtggatgataatgtagctaaaaccagccagcttctggca
gagttgaattttgaagaagatgaagaagatacttattatacaaaggatcttcccgtgcat
gcttgcagttactgtggtatccatgaccctgcctgtgtggtttactgcaacaccagcaaa
aagtggttctgtaatgggcgtggaaatacatctggcagccacattgttaatcatcttgtg
agagcaaagtgcaaagaggtgactctccataaagatggacctctaggagaaactgtcttg
gaatgctacaactgcggatgtcgtaatgtgtttctccttggctttattccagctaaggca
gactctgtggttgttctgctgtgcaggcagccatgtgcaagtcagagcagtttaaaggat
attaattgggacagttcacagtggcagcctcttatccaggatcgctgtttcctttcgtgg
ctggtaaagattccatctgagcaggaacagttgcgagcacgtcagatcacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggacttagaa
aagcctggtgttgatgaagagccacagcatgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctagtcaagctcgaggcagactatgacaagaagcttaag
gagtctcagacccaagataacatcacagtcagatgggacctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtcttatgcaaggagatgag
atctgcttgaggtataaaggagacctggcccctttgtggaaaggaattggccatgttatc
aaagttcctgatagttctacagattatggtgacgagatagccatcgagctgaggagcagc
gttggagcccctgtggaagttactcataacttccaagtggattttgtgtggaagtctact
tcatttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcggtgtca
ggatacatctatcacaaactgttaggccatgaagtggaagatgtaattattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgtcctctgagccttatccagggtccccctggtactggaaaa
acagtgacatcagctaccattgtctatcatctggctagacagggcaacgggcctgtgcta
gtctgcgccccgagtaacatagctgtagatcagctgactgagaagatccatcagactggt
ctgaaggtggttcggctgtgtgctaagagcagggaggcaattgactcacctgtgtccttc
ttggcactgcataaccagatcagaaacatggatagcatgccagagcttcagaagctgcag
caacttaaggatgaaactggagaactgtcgtctgctgatgagaaacgttaccgtgcgctg
aaacgaacagcagagcgtgaactgctcatgaatgcagatgtgatttgctgcacgtgtgtg
ggagctggcgatccaagacttgcaaaaatgcagttccgctccatcctgatcgatgagagc
acgcaggccactgagccagagtgcatggtgccagttgtgctgggagcaaagcagcttatt
cttgtcggtgaccactgccagcttggtcccgtcgtgatgtgtaagaaagctgcgaaggca
ggcctgtcccagtccctgtttgagaggctggtggtgctggggatccgccccattcgcctg
caggtgcagtaccgcatgcaccctgccctcagtgctttcccatccaacatcttctatgag
gggtcgctccagaatggtgtcactgcggctgaccgtgtgaagaaagggtttgatttccag
tggccacagccagataagccaatgtttttttatgttacacaaggacaggaagaaattgcc
agctcgggcacctcttacttgaacagaacggaagctgccaatgtggagaagataactaca
aagctattgaaagctggtgccaaaccagatcagattggcattattactccttatgagggc
cagcgatcctatctggtgcagtacatgcagttcagtggttccctgcatacaaaactttac
caggaagtagaaattgcaagtgtggatgccttccaaggacgagagaaggactttattatc
ctctcttgtgtgagggccaacgaacaccaagggataggatttctgaatgaccccaggcgt
cttaatgtggctcttacaagagcaagatatggagtgattattgttgggaacccaaaagct
ctgtctaagcaacctctttggaatcacctgctgaattactacaaggagcagaaggttctg
gtggagggaccgctgaataacctccgggagagcctcatgcaattcagcaagcccaggaaa
cttgtcaataccatcaacccaggcgcccgcttcatgactactgccatgtatgatgcacgt
gaagctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaacatg
tacttccaaacccacgaccagatcgggatgatcagtgcgggccccagccacgtcactgcc
atgaacattcctatccccttcaacctcgtgatgcccccgatgccgccaccgggatatttc
gggcaggccaacggcccggctgcaggacgtggggcacccaaagggaagactggtcgcggt
gggcgccagaaaaaccgttttgggattcctggaactagtcagtccaaccttcccaatagc
caggcgagccaggacgtggtgtcccagcctttctcccagggtccactgactcaggggtat
atctccatgagccagccgtcacagatgagtcagcctgggctctcccaaccagaattatca
caggacagttaccttggtgatgagtttaagtctcagattgacgtggcgctgtcacaggac
tctacctaccagggggaacgcgcgtatcaacatggcggagtgacgggactgtcacagtat
tag
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integrated database retrieval system
