Numida meleagris (helmeted guineafowl): 110389342
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Entry
110389342 CDS
T06015
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110389342 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmel03019
]
110389342 (SKIV2L2)
03041 Spliceosome [BR:
nmel03041
]
110389342 (SKIV2L2)
03009 Ribosome biogenesis [BR:
nmel03009
]
110389342 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
nmel03016
]
110389342 (SKIV2L2)
Enzymes [BR:
nmel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110389342 (SKIV2L2)
Messenger RNA biogenesis [BR:
nmel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110389342 (SKIV2L2)
Spliceosome [BR:
nmel03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110389342 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
110389342 (SKIV2L2)
Ribosome biogenesis [BR:
nmel03009
]
Eukaryotic type
Pre-60S particles
Helicases
110389342 (SKIV2L2)
Transfer RNA biogenesis [BR:
nmel03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110389342 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110389342
NCBI-ProteinID:
XP_021235263
LinkDB
All DBs
Position
Z:17022068..17061820
Genome browser
AA seq
1029 aa
AA seq
DB search
MADAFGDELFSVFEGDAAGARSKAGAAEAARRPGKRPEDKPSVAALGKARRDAEVDSTEG
AISGKKPKLEDVTSEDNNLADLMPHVKVQAVETVEGCTHEVALPADEEFTGLKPRTGKPA
KEYPFSLDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRP
TPLQHYIFPAGGDGLRLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSN
VFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSD
EDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPA
RTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLK
GSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQYN
KIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDFGWGV
VVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPARPDEKGEMQVVPVLV
HLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKV
IQKVEAFEHRMYSHPLHNDPNLETIYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKC
RKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFV
FQENSNEMPKLTEQLAGPLRQMQECAKRIARVSAEAKLEIDEENYLNSFRPNLMDVVYTW
ANGASFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggatgagcttttcagcgtgtttgagggggacgcagccggcgcc
aggagcaaagcgggtgccgctgaggctgccaggaggccgggaaagcggccggaggacaaa
ccgtcggtagcggcgctggggaaggccagaagggacgctgaggtcgacagtacagaaggt
gcgatttcgggaaagaagccgaaactggaagatgtcacgtcagaagataataatctggca
gacctgatgccacatgtaaaggtgcaagctgtggaaactgttgaaggctgcacgcatgag
gttgcacttccagcagatgaagagttcacggggctgaagccaagaactggaaaacctgcg
aaagagtacccatttagtcttgatgcctttcagagagaagctattctgtgtgtagataat
aaccagtctgtattggtgtcagctcatacatcagctggtaaaactgtatgtgcagagtat
gcaattgccttggctttgagagaaaaacagcgtgtgatatttacaagtccaattaaagct
ttgagtaatcagaaataccgtgagatgtatgaagagttccaggacgttggtttgatgaca
ggagatgtcaccattaatcctacagcttcttgtctagtgatgacaacagagatcttgaga
agtatgctctacagaggttctgaggttatgcgagaagttgcgtgggttatttttgatgaa
atccattacatgagagattcagaacgtggtgtggtttgggaagagacaattattttgctc
cctgacaatgttcattatgtgttcctttccgcaactattccgaatgctcgtcagtttgct
gaatggatttgccatcttcacaaacagccttgccatgtgatatatacagactatcgacct
actccactgcagcattatatattcccagcaggaggagatggactacgtcttgttgttgat
gaaaatggagatttcagagaggataattttaatacagcaatgcaagtgcttagagatgca
ggagacttagccaaaggagaccagaagggcaggaaaggaggaacaaaaggcccttccaat
gtatttaagattgtgaagatgatcatggaaaggaatttccagcctgtaatcattttcagc
ttcagtaaaaaggattgtgaagcctatgctcttcagatgacaaagttagatttcaataca
gatgaagaaaaaaagatggttgaagaagtgttcaataatgcaattgactgtctgtcagat
gaagacaaaaagcttcctcaggttgagcatgtacttcctcttctgaagcgtggaataggt
atccatcatggcggtctgcttcctatcttaaaagaaaccatagaaattcttttctcagag
ggcctaataaaggccttatttgcaacagaaacttttgctatgggaattaatatgccagcc
aggactgtgctgtttacaagtgcctccaaatttgatgggaaagacttccgatggatttcg
tcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggtatggatgacagagga
atagtaattcttatggtggatgaaaaaatgagtccaacaattggcaagcaacttttaaag
ggttcagctgatcccctgaacagtgcattccacctgacctacaacatggtattgaacttg
cttcgagtagaagaaattaaccccgaatacatgttggaaaaatcattctatcagtttcaa
cattacagagctattccgggagtggttgaaaaggtgaataaattggaagaacagtacaac
aaaatagtaattcccaatgaagaaaatgtggtcatatactacaaaatccgacagcagctt
gcaaaactgggtaaagagattgaagaatatattcacaagccaaaatattgcttgcccttt
ctgcagccaggaagactggtaaaggtgaaaaatgaagatgatgactttggatggggagtg
gttgttaatttctcaaagaaatccaatgttaagcctaattctggtgaattggacccctta
tatgtagttgaagtgctactgcactgcagcaaagagagtctgaaaaattctgctactgag
gctgcaaagccagcaagacctgatgagaaaggagagatgcaggtcgttcctgttctggta
catcttctctcagccataagcagtgtccgactttacataccgaaagacctgaggcctatt
gacaacaggcaaagcgtgctgaaatctatacaagaagtacagaagcgatttcctgatggg
gtaccgttgttagatcctattgatgacatgggtatcaaagatcaaggactgaaaaaagta
atccagaaagtagaagcatttgagcataggatgtattcacatcctcttcataatgatccc
aatttggaaactatatacaaactttgtgaaagaaaagcacagattgctatggatattaag
gcagcaaagcgagaattgaaaaaggccagaactgtcttacaaatggatgaactcaaatgc
cgcaagcgtgttttgagaaggctggggtttgccacatcttccgatgtcattgagatgaaa
ggacgtgttgcttgtgaaatcagcagtgctgatgaacttctcctgacagaaatgatgttt
aatggtctcttcaatgacttatctgcagaacaggcaactgcgctgctaagctgttttgtg
tttcaagagaactccaatgaaatgcccaaactgacagagcagctggcgggaccacttcga
caaatgcaggagtgtgctaaaagaatcgccagggtatcagcagaagcaaaactggagatt
gatgaagaaaattacttaaattctttcagacccaatctcatggatgttgtatatacgtgg
gcaaatggagctagctttgctcacatttgcaaaatgactgatgtctttgaaggtagcata
attcgttgtatgagaaggctggaagaattgcttcgacaaatgtgtcaggcagcaaaagcc
attggaaacacagagctggaaaataagtttgcagagggtattacaaaaatcaagagagat
attgtgtttgctgcaagcctttacctgtaa
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