Numida meleagris (helmeted guineafowl): 110390885
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Entry
110390885 CDS
T06015
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110390885 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmel03021
]
110390885 (PCF11)
03019 Messenger RNA biogenesis [BR:
nmel03019
]
110390885 (PCF11)
Transcription machinery [BR:
nmel03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110390885 (PCF11)
Messenger RNA biogenesis [BR:
nmel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110390885 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
110390885
NCBI-ProteinID:
XP_021238113
LinkDB
All DBs
Position
1:187088361..187108746
Genome browser
AA seq
1693 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTASTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIPSVPAPSKPHVSQTPHMTVKTPNQTSLQSEKIKPSPSPPLHDVKIVNRDPRLNRM
SQHSSHAKDQSHRKEFPPNTTGQADTKASKTSQSEKQNSTKQEKLKAGEKTQKKEPDQSE
TKSKSPSPLKNKLPNTKDTKTQESESTKVSEMSKRDPRLKKHLQEKPESKGDEVKEKRRN
TEKKEKDEHKTCEHRPVGSRNKTVNGVVQKQDVTTEESEKQAGKQGRSSSRKRSRSRSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHAEDAAQAARDERNSN
KRNVKQEVRDPRRVKKSQEDRPQETASQHSTKTSPDPKENAENWQGSKAGKRWKSGWEEN
KNSQQTEEHQAVGKSPHQRHRENWTAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLASGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKGPLKRKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDADDILDYHVPDALLSGMDCEQAKAKRGAQFE
RKEPFGERSRRHSPVSGTSRPFADNLSPLESRRRLEEQNATKGGRSSKKFDPYDNWGESD
EFRDALRQQGKNTPEFQKIDGDAVCRFDNREDRQLLGKAGVRDEPRSPFNERFKRSRYED
PDKEPFPDSPGSRFGGIEAKPRISALMEDRPLFDGSPRPASARVGADGQGSPFIDSPTAG
SNSRIDGPPGQAALRFEGPLVGAGASQFDGPLAGAGGAGALRFDGPPGQLSGSLRFEGPQ
GQVGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPLGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPPGVGPRLIDGPVHQGVGGLRFDGPLGRTGPRFDGC
HAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQPAQPRFDAAIPQRFDGPHQPSSRFDL
PLGLHGARFENIASHPASRLEMSPYGQSGPFVDHPGQGYSGPAHGMQFQRPELFDNAPGP
NFSGPAGPGAQNFSLRASGHYFDEKLQGPQYGNFNNMSMGGHQVSHMSAQPGTYGQGQQY
LPNPGSFVQNPAGGLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQANETSAQ
PAAEEEDDDQGDHDVPDLTNFRVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYAD
HLDWHYRQNRSEKDVSRKITHRRWYYSVTDWIEFEEIADLEERAKSQFFEKAHEEVVLKT
KEAAKEKEFQSVPAGPAGAVERCEICREQFEQYWDEEEEEWHLKNAIRMHDKIYHPSCYE
DYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETEESCDSPQVKEEPDDTPAACAEESTP
ASIDIKTEPDESV
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggacgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcttggcctattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcatctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcgaagcaaaagcagttgttagaacttcagcaaaaaaag
ttagagctggagttggaacagactaaagcacagttggctgtttctcttagtgttcagcaa
ggatcatctacaataccttcagttccagcaccttccaagccacatgtgtcccagacacct
cacatgacagttaaaacacctaatcagacttctctgcaatctgaaaagatcaaaccatcc
ccaagtcctccacttcacgatgtcaaaatagtaaatagggatcctcgacttaataggatg
tctcagcattcttctcatgctaaagatcagtctcataggaaagaatttccaccgaacaca
actggtcaggctgataccaaggcaagcaaaacatctcagtctgaaaaacaaaactcaaca
aaacaagagaaattgaaagcaggtgaaaaaacacagaagaaagaacctgatcagtcagaa
acaaagtctaaatcgccatctcctttgaaaaacaagcttcccaatactaaagatactaaa
acccaagaatctgaaagcacaaaagtatctgaaatgagcaaacgggatccaagactgaaa
aaacatcttcaagaaaagccagagagcaaaggggatgaggtgaaagaaaagaggagaaat
acagagaaaaaagaaaaagatgaacataagacatgtgaacatagaccagtaggcagcaga
aataaaacggttaatggtgttgttcagaaacaagacgtgactacggaagaatcagaaaag
caggctggaaaacaagggagatccagtagtagaaaacggtctcgatcccgctctcctaag
tcacggtcgccatctacacattctccaaaacgaagagagaggagatcacccaaaagaaga
ctccggagtttatctcccacttcttcaactcctaaaattggaaagatacgtcagattggt
cctaagcagtctcatgctgaagatgccgcgcaagcggcaagagatgaaagaaattctaat
aagcgaaatgttaaacaggaggtgcgagatccaaggagagtgaaaaaaagccaggaagac
aggccccaagaaacagcaagccagcattctacaaaaacttctcctgatccaaaggagaat
gcagagaattggcagggatccaaagcaggcaagaggtggaagtctggttgggaagaaaat
aaaaactcgcagcagactgaagaacaccaagcagttggtaaatcccctcaccaaagacac
cgagaaaactggactgctgctaagggaattctgtctccccgagcaccaaagcagcagcac
cgattaagtgtggatgccaatttacaaattcccaaagaactgacatctgcaagcaagaga
gaattacttaaaaaggccaatgaccgtttagcatctggtgaaataacacaagatgagttc
cttgtggtagctcatcagattcgacagctgttccagtaccaggaaggaaagcacagatgt
aatgtgtgggatagccctacagaggaaaaaggccctttgaaaaggaaacctcttctatct
gatgcggagttaacgtactacgagcataaagctaaactgaaaagaacacaagttcagcat
tcattgtcaaggcttgatctcttggatgctgatgacattctggattatcatgtaccggat
gcattgctttctggaatggactgtgagcaagcgaaggcaaagcgtggggcacagtttgaa
agaaaagaaccttttggagaaagatcaagacggcactctcctgtaagtggcacgagcaga
ccctttgctgataacctttcgccacttgagagtcgacgaaggcttgaggaacagaatgct
actaaaggaggcaggagttcgaaaaagtttgatccttatgacaactggggagaatcagat
gaattcagggatgctctcagacagcagggaaaaaatacaccagagttccagaagatagat
ggtgatgcagtctgtaggtttgataaccgtgaggacagacagcttctcgggaaagctggt
gttcgagatgaaccaagatcaccattcaatgaacgtttcaaaagatctagatacgaagac
ccagataaagagccatttccggacagtccaggatcaagatttggaggcatcgaagcaaag
ccgagaataagtgcgctgatggaagacagacccttatttgatggctcacctagaccagct
tctgcaagagttggggcagatggacaaggaagtccttttattgatagtcctactgctggt
tcaaattctagaattgatgggccacctggacaggctgctctgagatttgaggggccgttg
gtgggggcaggagcatctcagtttgatggacccctggcaggagcagggggagctggagcc
ctaagatttgatgggccaccggggcagctgtcagggtctctcaggtttgaaggaccccag
ggacaggttggtggaggaggtcctctgaggtttgaaggacctcttggacagataggtggg
ccattgaggtttgaggggcctgcaggccagcctgtgggtggtcctagatttgaaggacct
ggagttggtctcaggtttgagggaccccgtggtcagccttcaggtggtctcaggtttgag
ggacctcacggtcaacctctggggcctcgaggtcaaccagggggtggtctcaggtttgag
ggaccccatggtcagcctttggggcctcacggtcaaccaggaggtggtctcaggtttgag
ggtccgcatttacagccattggggccccatggtcaacctggaggtggcctcagatttgag
gggccacatgggcagcctatggggccgcatggaccgtctggaggtgggctcagatttgag
gggccacatggaccgccaggtgtagggcccaggttgattgatggaccggtgcaccaggga
gttggtggacttagatttgatggtcctctgggacggactggtccgagatttgatggctgt
catgctgggtttgatggtcagcctggacagctgtctcttctgcaaagatttgatggaatt
catggacagcctggcccgagatttgaaagggctcctggccagcccgcacaaccacgattt
gatgcagccatacctcaaagatttgatggtcctcaccagccatcctcaaggtttgacctg
ccccttggccttcacggtgcacgttttgaaaatatagctagccatcctgcctcaagatta
gagatgtcgccatatggacagagcggtccgtttgttgaccatcccggacagggctacagt
gggccagctcatgggatgcagttccaaaggcctgaattatttgataatgcaccaggacca
aatttcagtgggccagctggcccaggagcacagaatttttcattgagagcatctggacat
tatttcgatgaaaaacttcagggtcctcaatacggaaacttcaataatatgtcaatggga
ggtcatcaggtttcgcacatgtctgctcagccgggaacttatggccaaggtcagcagtat
ttaccaaatcctggcagctttgttcagaaccctgcaggaggccttccacattcatatcct
gataaccaccttggtcagcttgatgtcaatgaattgtttgctaaactgttgtcaacagga
atcctcaaactgtccaaaacagattccacttcagcacaagcgaatgaaacatctgcgcag
ccggctgctgaggaggaggatgatgaccagggtgatcacgatgtcccagacctcacaaac
tttagagttgaagaactcagacagcgttacgatagtgttataaatcgactgtacactgga
attcagtgctactcgtgtggaatgagatttactacttcccagacagacgtttatgctgac
catttagattggcactatcgtcagaaccgctcggagaaagatgttagcagaaaaattacg
cacagaaggtggtactacagcgtaacggattggattgaatttgaagaaatagctgattta
gaggagcgtgcaaaaagccaattttttgaaaaagctcatgaagaagttgttctgaagaca
aaggaagctgcaaaagagaaggagtttcagagtgtccctgctggaccagctggagcagtt
gagaggtgtgaaatctgccgagagcaatttgagcagtactgggatgaggaagaggaagag
tggcacctaaagaatgctatcagaatgcacgacaagatttaccatccatcttgttacgaa
gattaccaaaacacgtcatcgtttgattgcacaccctctcccagcaagacccctgtagaa
aatcccctaaatattatgttgaacattgttaaacaggaaacagaggagtcctgtgactca
cctcaagtgaaagaagaacctgatgacacccctgctgcctgtgcagaagagagcacacct
gcatctatagatattaaaacagaaccagatgagtctgtttga
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integrated database retrieval system
