Numida meleagris (helmeted guineafowl): 110393529
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Entry
110393529 CDS
T06015
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nmel03016
]
110393529 (RTCB)
Enzymes [BR:
nmel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110393529 (RTCB)
Transfer RNA biogenesis [BR:
nmel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110393529 (RTCB)
Prokaryotic type
tRNA splicing ligases
110393529 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
110393529
NCBI-ProteinID:
XP_021242119
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All DBs
Position
1:54009704..54021401
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcacgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcgggt
ggctttttgcctgctatgaaacagattgggaatgtggctgcgttacctggaattgttcat
agatccataggtctgccagatgtccattctggctatggctttgccattggcaacatggct
gcctttgatatgaatgatcctgaagcagtggtgtcaccaggcggtgtcggatttgacatc
aactgcggtgtccgcttactgcgtacaaatttggatgaaagtgacgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgtcggtgtcggttcgaagggtgtc
atccccatgaatgccaaggatttggaagaggctctagagatgggtgtagactggtctctc
cgggaaggctatgcctgggcagaagacaaggagcactgtgaggaatatggaagaatgctg
caggctgatcccaacaaggtctcttcaagagcaaagaagaggggcctgcctcagctgggg
accctgggagcaggaaatcattatgctgagatccaggttgtggatgacatttacaatgaa
tatgctgccaggaagatgggcatcgaccacaaaggacaggtttgcgtaatgatccacagc
ggcagcagaggtttgggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcgccagctagcatgtgccaggattgcctct
gtggagggacaggattacttgaagggaatggcagccgctggaaactatgcatgggtcaac
cgctcttctatgactttcctaacaagacaggcttttgccaaagtcttcaacacaacccca
gatgaccttgatatgcatgtcatctacgatgtgtctcacaacattgccaaagtggagcaa
cacgtagtggatgggaaggaaaggactctgctagtgcacagaaaagggtcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactgggcagcctgttctg
atcggtgggactatgggcacctgtagctatgttcttactggcacggagcaaggcatgact
gagacgttcggaactacttgccacggagctggtcgtgcactgtctcgagccaaatctcgg
cgtaacttggacttccaggacgtactggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttataagaatgtgacagat
gtggttaatacctgccatgcagctggcatcagcaagaaggccattaagctgagacctatt
gctgttataaaaggctag
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