Numida meleagris (helmeted guineafowl): 110395954
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Entry
110395954 CDS
T06015
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel04120
Ubiquitin mediated proteolysis
nmel04137
Mitophagy - animal
nmel04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110395954 (PRKN)
04120 Ubiquitin mediated proteolysis
110395954 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
110395954 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nmel04131
]
110395954 (PRKN)
04121 Ubiquitin system [BR:
nmel04121
]
110395954 (PRKN)
03029 Mitochondrial biogenesis [BR:
nmel03029
]
110395954 (PRKN)
Enzymes [BR:
nmel01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
110395954 (PRKN)
Membrane trafficking [BR:
nmel04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
110395954 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
110395954 (PRKN)
Xenophagy
Other xenophagy associated proteins
110395954 (PRKN)
Ubiquitin system [BR:
nmel04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
110395954 (PRKN)
Mitochondrial biogenesis [BR:
nmel03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
110395954 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
IBR_2
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
110395954
NCBI-ProteinID:
XP_021246741
LinkDB
All DBs
Position
3:44757367..45469611
Genome browser
AA seq
486 aa
AA seq
DB search
MIVFVRFNSSHGFPVELGLDASILQLKEVVAQRHGVPADQLRVIFAGRELSNNLTLQNCD
LVQQSIVHIVQNPQKSSDKDETEDNHAGGILKTLERVPESLTRVDLSSSILPSLSAGLAV
ILDTKEPNISPPSEKTGAASYNSFYVFCKNFCQAVQPGKLRVRCSECKQGTLTLARGPSC
WDDVLIPNRITGVCQSPKCSGNIAEFYFKCGAHPTTDSETSVALNLVTTNSRGITCITCT
DIRSPVLVFQCMHRHVICLDCFHLYCVTMLNDRQFICDPELGYSLPCVAGCPDSLIKEVH
HFRILGEEQYNRYQRYGAEECVLQMGGLLCPTPSCGAGLLPEPGVRKIVCEPGNGIGCGF
VFCRECKEEYHEDECSSFFSTQGAVAQKGYVVDENAAMQARWEEASKETIKKTTKPCPNC
HIPVEKNGPVLSSPINMWIQQSMASEGATAVINLEEGACHEKLQELSLFILENRKLRGIL
AMCKNT
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagccatggcttcccagtggagcttgggttggac
gccagcatcctccagctgaaggaggtggttgcgcagcgacatggagttccagctgaccag
ctgcgggtgatttttgcagggagagagcttagcaacaacttaacgctgcagaattgtgac
ctggtccagcaaagcatcgttcatattgttcagaatccacagaagagtagtgataaggat
gagacagaagataaccatgctggaggcattctaaaaacattggaaagagtacctgaaagt
ctaactcgtgtagatctcagttccagcatcctcccatcactgtctgcagggttggctgtt
attctggatactaaagaacccaacatttctcccccctctgaaaaaacaggtgcagctagt
tacaacagtttttatgttttttgcaaaaatttctgccaagctgtgcagcctgggaaactg
agggtccgatgcagtgaatgtaaacaaggaacactcactttggcaaggggcccatcttgc
tgggatgatgtgctgattccaaacagaataactggtgtttgccagtccccaaagtgcagt
ggaaacatagcggagttttactttaaatgtggagcgcacccaacaactgacagtgaaaca
tctgtggcattgaaccttgttactacaaacagtcgcggtatcacatgtataacatgcacg
gatattaggagtcccgtgcttgtgttccagtgcatgcatcgccatgtcatttgcctggac
tgtttccatttgtattgcgtgactatgctgaatgaccgtcagttcatctgtgacccagag
cttggctactcccttccttgtgtagctggctgcccagactccttgattaaagaggttcat
cacttcaggattctgggagaagaacagtacaaccgctaccagcgctatggtgcagaggag
tgcgtgctgcagatgggcggcctgctgtgtccaactcccagctgcggcgcgggtctgtta
cctgaaccaggagtgaggaaaatagtatgtgagccaggcaatggaataggctgtgggttt
gtgttctgccgtgaatgtaaagaagaataccacgaggatgaatgcagctctttcttcagc
acacagggagctgtggcccagaaggggtatgtagttgatgaaaatgcagccatgcaagcc
cgatgggaagaggcatctaaagaaacaatcaagaaaacaaccaagccatgccccaactgc
catattccagtggagaaaaatggtccagttctgagctccccaataaacatgtggatacag
cagagcatggccagtgaaggggctacagcggtgattaatttagaggaaggagcatgtcat
gagaagctgcaagagttgagtctgttcatcctggagaacagaaagctgaggggaatctta
gcaatgtgcaaaaatacctga
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