Numida meleagris (helmeted guineafowl): 110398034
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Entry
110398034 CDS
T06015
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel04382
Cornified envelope formation
nmel04510
Focal adhesion
nmel04512
ECM-receptor interaction
nmel04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110398034 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110398034 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110398034 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
110398034 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nmel04147
]
110398034 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
nmel00536
]
110398034 (COL4A4)
Exosome [BR:
nmel04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110398034 (COL4A4)
Glycosaminoglycan binding proteins [BR:
nmel00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110398034 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110398034
NCBI-ProteinID:
XP_021250979
LinkDB
All DBs
Position
4:complement(11567723..11635722)
Genome browser
AA seq
1681 aa
AA seq
DB search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NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcggtaacaaaggattcatttgaacgaattaagtggcttatcagaactgcctggtgg
ctgctgattgttttttcagtacaagaaattgatgggggaggatatgcatacattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcag
cctggtgagctgggagctcagggtccaattggatccttgggacctacaggaccagctggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaaccggagtcccaggatttcctggcttagatggtgttcctggatta
ccaggaagtgaaggacccaggggcaagcacggagtagatggctgcaatggctcaagagga
gatccaggatttccaggcgaaaatggatatattggaccaagaggtccttacggaaatcca
gggcaaaaaggagaaaaaggaaattcagtgtatgtttcatattttggaaaaggaccccca
ggagacagaggtgatcctggcccccctggtatgcccggacctagaggatcgacaggtaca
acaggcccacctggatacccaggccaaccgggcatgcccggtattccaggttaccctggt
ttgccaggtgaacagggaaacccaggtattggagtggatggacaaaagggggaaccgggt
gatgttggactacctgggccacctgggtcaccgctgttagttggacctcctggagctcag
ctgttcaaaggagaaaagggccaaaaaggactacctgggataacaggatacagaggacca
catggacccaaaggaatacctgggaaaggagaaaaaggtgaaaaaggcattcctggattc
cccggattgcggggtagtcctggttctcctggaccagcaggctttccaggaataaaggga
gaaatgggtgttgctggttttcctgggatacctggctatccaggcatcaagggggatcct
ggagaaaaagggcccccgggtcctcctggagctgttggaactccgctgcttcctgtgaaa
ggcccacaaggagatcctggatttccaggtcctgcaggtgacatggggtcagttggacct
tctggccctgtgggcctgctaggaagaccaggagatgatggaacaagtctgcctggcctg
ccaggaataagtggggcaccaggacctcaaggttttcaaggtgaccctggtttgcctgga
acgggtgaagcaattccaggaagacctggatttcctggaccacctggactaccaggacag
ccaggaagacaaggcttacctggactacctagtgtaatttgtactgagagagggattcct
ggagaacctggagcaaaaggtcagataggccttccgggaagaaaaggtgaaaaaggagaa
aaaggaaatcaaggcctgtgctcatgtagtgctggtcctcctggtccccgtggtatacaa
ggacctccaggtactcaagggaagaaaggacaaatgggttaccctggaagacatggagaa
aagggtgatccaggcttatctggtgcagctggatcaccagggctccctgggacacctggt
tctggaggacaacatggtgaaaaaggagagaagggtgaccaaggaagagtttcaataaaa
ggaataaaaggtgaaagaggtcctactggggttccaggatttccaggccaaaaaggtaat
gatggcagagatggggatttaggattgcctggggaaaaaggagctgagggtgaatctgga
gtaccaataccaggtgataaaggatttcctggagttccaggactacccggagtaaaagga
ccgatgggattgcctggtttggggtttcctggccctccaggagtcagaggtacccctgga
gactttggtgatgatggtaacattgggctgcctggtccgaagggtcagaaaggtgacact
gtctgcattacatcaccataccctggaaatccaggtcccccaggttttaaaggcgttcaa
gggccaaagggtttaaaaggactccctggtcttcctggaccaagtggctttgatgggcca
aaaggccagcgaggcaggccaggagcaggaatccctggaccagaaggcttccgaggcaca
gctggtgatcctggtgaagaaggtgaaagaggatctatcattgatggtaaaaatggtgct
ccaggtccacccggcatggatggccagaaaggcgttccaggtgatactacatatggccct
ccaggaatcccaggcaacaggggactgccaggaccacctggtgcacaaggagcaaggggt
gatccaggcattcctggggctcaagggtaccctggaaccccaggatttccaggtgctaaa
ggttttagaggcccagaaggtgatacaggagcgccaggctgtccaggcatccctggtcca
ccatgtgacacgagattaccagggccacctggactcagaggtgtcacaggcctgccaggt
cctcaaggcgtaccgggctttaaaggtcagaagggagacaggggcctagctgggccacct
ggaatcaaaggtctcaagggctcccctggctcacagggccccccaggtcctccagggtcc
cgaggacttccaggacctccaggcaataaaggaccacctggcttcccaggacaaacagga
agcaaagggattcaaggaccccaaggattccctggactcccaggaacacaaggcccaatg
ggaatttctggtgtaaaaggtgaagaaggaaacatgggtccacctgggcctagtggagaa
tgtggggatatgggaatgaaaggtgaaagagggcttccaggagacagtggcagcattcac
attcgccttgagaaaggacaaaagggggaaccagggtttcctggtgagaatggatttaga
ggtgaaagaggtgaaaaaggaaatactggtttcagaggtgccccaggatttccagggaac
agcggtgccccaggactcccaggtgaccatggtgacactggactgatgggatttccagga
tcacgtggtttcccaggaccaaagggctctaaaggaattgcaggtttcaaaggactacca
ggtgaccagggtgatgttggcttaccaggaatgcctggaaacccaggactgacaggcccc
aaaggacctaaaggaaagagaggtgacccaactcttctgcttggtgcacaaggtcgaaaa
gggtctcctggagatccaggattaccaggattctgtggattcccgggtgagaagggttca
ccaggtatccgagggcaacctggaagaccaggatccaagggcgagcctggatacccagga
atacctggatttccaggagctacaggccctccaggattaccaggagaacctggagaaaaa
gggaaacacggaattttgggacctccggggctgcaaggattaactggaccacaaggtaga
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagcgccaggtcaaagtgaaatagggcgcccaggatactcaggagaacctgga
ccgaaaggagagagaggtgaacctggatggcctggtatctccattccaggcacccctgga
gaaaggggattcccaggattcccaggtagaagaggacctgctggactccctggacctagg
ggaagatctcccagtagcgctcctcctggtcttccaggtgatcaaggaccacctggttta
gatggcatcagaggtcagcctgggaatcctggtcctcctggagagactatctttgtgcga
ggagatccaggtgacattggtattcaaggggcaccaggccttcctgggcagcgagggcta
caaggagccagaggtcttccaggaaatcaaggaagagaaggtccaaagggtcctatggga
atccatggctcccagggtccacctggtgctgtaggacaaccaggagaccaaggtttccag
ggaaaacctggtcctaaaggtcccacaggcttcacaggtgatcctggtgaaccaggaaaa
acagatgactcatgtcctgcaatcccagggcctcctggggaagcaggacatagaggagat
gatggttctataggattaccagggccaataggtcatcctggagcccaaggaaggaaaggt
gaagaagggtcatgtggcctgccaggtcaggatggcttaccgggagcacctggaccacct
ggtgaccaagggcatgtgggagagcaaggatatgctggaccacaaggtccacctggccag
actggtatcccaggaccaccagggccccatattagatcttcaagtggattcttgctcgtc
cttcatagtcagtcagacagagaaccactttgtccacaggggatgccaaaattatggact
ggctatagtctgctgtacctggaaggacaagagaaagctcataatcaagatcttggtctg
gcaggatcttgtcttcctgtatttagtaccatgccctttgcttactgtaatatcaaccaa
gtttgttactatgccagccgaaatgataagtcatactggttgtcaagtgcggctccctta
ccaatgacaccactctctgaagaagaaatacgaccatatataagcagatgtgctgtatgt
gaggccccagcccaagcagtagcagttcacagccaagatcagtcaattcctccctgccca
gtgaactggagaagtctttggataggatattcttttttgatgcacactggatctggtgat
cagggaggtgggcagtcccttatgtcaccaggaagctgcttagaagacttcagatcagca
ccgttcattgaatgccagggtcaacggggaacttgtcagttttttgctaacgaatacagc
ttctggctaacaacagtgatgcctgacctgcagtttgcatcagcccccttgtcaggaact
cttaaagaaggacaagagcagaggaaaagaatcagtagatgtcaggtatgcctgaagcac
gactaa
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