Numida meleagris (helmeted guineafowl): 110400829
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Entry
110400829 CDS
T06015
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110400829 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmel03019
]
110400829 (PATL1)
Messenger RNA biogenesis [BR:
nmel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110400829 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
110400829 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
110400829
NCBI-ProteinID:
XP_021256766
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All DBs
Position
6:complement(1420375..>1424971)
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AA seq
757 aa
AA seq
DB search
MFRYPSLEECPLDEEEDGFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEEKP
VGSGQQAAPSNEDAELLGEPEDALAERLTRLVIESELEDPAIMRAVHTRGPGAQSMALNT
SIWDGPSVLQRIRTPLLSQEMPSVSVLDYALPQRPPQAREEERDPSERALPRRSSSPIIG
SPPVRAVPIGTPPKQAAVPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPTSVSPVLTHLQRAQLLGGAQAGRISPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMAPTGGFRAFFGAGPAPPSQPQPPPGPVPHLQGLRPQPFRPDTTHLHPQHRRLLHQR
QQQNRNQHRGLNGSVGDRGGHRGSHQEQARKDPYANLMLQREKDWVSKIQMMQLQSTDPY
LDDYYYQNYFQKLEKLSAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTV
SSVNNPRKMIDAVVTSRGEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSL
EGERPALMGERKQKICNMYDNLRGKTPGQERPSDDHFMQIMCIRKGKRLVARILPFLSPE
QAADVLLATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQSAA
APAAANLHLAAVLQNKFGLSLLCLVLSRGEELQSMDGGAELMRDNQWTELMLLATRELLR
VPSAALPKPVAPPSNLLSLFSRYVDQQKLNLLQTKLQ
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggagtgcccgctggatgaggaggaggatggcttccag
gcgctgggcgaggaggacgaggacatcgaccagttcaacgatgacacctttggagccggg
gctgtcgacgatgactggcaggaagcccacgagcggttggccgagctggaggagaaaccc
gtgggctccgggcagcaggcagcgccgagcaacgaggatgcggagttgctgggtgaaccc
gaggacgcgctggcggagcggctgacgcggctggtgatcgagagcgagctggaggacccc
gccatcatgcgagctgtgcacacccgtgggcccggtgcgcagagcatggcgctcaacacc
agcatctgggatggcccctctgtgctgcagcgcatccgcacaccgctgctcagccaagag
atgccatcagtgtccgtgctggactacgctctgccccagaggcccccgcaggctcgggag
gaggagcgggacccctcggagcgggcactgccacgccgctcatcctcccccatcattggg
agcccccctgtgcgagccgtccccatcggcacccctcccaagcaggcggccgtgcccaat
tttaaccagcagatcctgtgtccgaagcccgtccacatccgggctaccatgcagcagcgc
taccctgctccctacggcgagaggatgtcccccaaccagctctgcaacgtaccgaactct
tccttgctgggccaccccttccccaccagtgtctctcccgttctcacccacctgcagcgg
gcgcagctgctgggaggagcacaggccggccgaatttctcccagccagttcgctcgagtc
tcaggcctcgttgggagccctctaccctccgtcaatcccaagctgctacagggcagagtg
gggcagatgatggctcccactggcggctttcgtgccttcttcggggctggccccgctccg
ccctcgcaaccgcagcctccgccgggccctgtgcctcacctgcagggcctgaggccgcag
cccttccgaccggacaccacccacctgcacccccagcaccgtcggctcctgcaccagcgg
cagcagcagaaccgaaaccagcaccgtggcctcaacggctcggtgggggaccgagggggc
caccggggcagccaccaggagcaggcgcgcaaggacccctacgccaacctcatgctgcag
cgggagaaggactgggtgtccaagatccagatgatgcagctgcagagcaccgatccctac
ttggatgactactactatcagaactacttccagaagctggagaagctgtcagcagctgag
gaagtccacggggacggtcccaagaaggagcgcacgaagctcatcacccctcaggtggca
aagctggagcacacctacaagccagtgcagttcgagggctcgctcgggaagctgacggtc
tccagcgtgaacaacccccggaagatgatcgatgcagtggtgacctcccgtggagaggat
gacgagacgaaggagaagcaggtccgggacaagcggcgccagacactcgtcaccattgag
aagacgtacagcctcctcctggacgtggaggactacgagagacgctacctcctgagcttg
gagggcgagcggcccgccctgatgggtgagaggaagcagaagatctgcaacatgtatgac
aacctgcgtgggaaaacgcctgggcaggaaaggccgagcgacgaccacttcatgcagatc
atgtgcatccgcaaaggaaagcgcctggtggcccgcatcctccccttcctctcccccgag
caagcggccgacgtgctgttggcgacggcccggaacctgcccttcctcatcaagaaggat
gctcaggacgaggtgctcccctgcctgctgcggcccttctcgcacgtcctctaccacctc
cccctggggacggtcaccagcctggtgcagcagctcaccaacctacctcagagcgccgcc
gcgcccgccgccgccaacctgcacctcgccgccgtgctccaaaacaagttcggcctgtcc
ctgctgtgcctggttctgagccgcggggaggagctgcagagcatggacggcggcgcggag
ctgatgcgggacaaccagtggacggagctgatgctgctggccacccgagagctgctgcgc
gtgccgtctgctgccctgcccaagccagtggcccccccctccaacctgctctccctcttc
tcccgctacgtcgaccaacagaagctcaacctgctgcagaccaagctgcagtga
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