Numida meleagris (helmeted guineafowl): 110401415
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Entry
110401415 CDS
T06015
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110401415 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmel03019
]
110401415 (CLP1)
Enzymes [BR:
nmel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
110401415 (CLP1)
Messenger RNA biogenesis [BR:
nmel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110401415 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
MMR_HSR1
ATP_bind_1
TniB
AAA_16
AAA_22
CbiA
Sigma54_activat
nSTAND3
Motif
Other DBs
NCBI-GeneID:
110401415
NCBI-ProteinID:
XP_021258198
LinkDB
All DBs
Position
6:complement(17173011..17175194)
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AA seq
425 aa
AA seq
DB search
MADDGGDEKKQVAKFELERETELRFEVEASQTVQMELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDDR
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSMADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgatggcggagatgagaagaagcaggtggcaaaattcgagctggagcgggag
acagagctgcgcttcgaagtggaggcctcgcagacggtgcagatggagctgctcaccggc
atggcggaggtgtttggcaccgagctcacccgcaacaagaagttcacctttgacgccggt
gcaaaggtggctgtcttcacctggcatggctgcactgtgcagctcagtgggcgcaccgag
gtggcatatgtctccaaggacacccccatgctgctctacctcaacactcacacggccctg
gagcagatgcggcggcaggcagagcgtgaggacgagcgggggccccgtgtcatggtggtg
ggccccactgatgtgggcaagtcgactgtgtgccgcctgctgctgaactatgctgtacgc
ctggggcgccggcccacctttgtggagctggacgtggggcagggctctgtctccatcccc
ggcaccatgggtgccctctacatcgagcggccggctgacgtggaggagggcttctccctg
caggccccgctggtctatcactttggctccaccacacctggcaccaacatcaagctctac
aacaagatcacatcccgcctggctgatgtcttcaaccagcgatgtgaggtgaaccgccgt
gcatcagtcagtggctgcgtcatcaacacatgcggctgggtgaaaggctcgggctaccag
gccctggtgcatgccgcctcggcttttgaggtggatgtggtggtggtgctagaccaggag
cggctctacaatgagcttaagagggacctaccccactttgtgcgcaccgtcctgctcccc
aaatctggtggggtggtggagcgctccaaggacttccggcgggaatgtcgagacgatcgc
atcagggaatatttctatggcttcagaggctgcttctacccccatgcctttgacgtcaag
ttctctgatgttaagatctacaaggtgggggctcccaccatccccgactcctgcctgcca
ctgggcatgtcgcaggaggacaaccagttgaagctggtgccggtgacgccagggcgggac
atggtacaccacctgttgagcgtcagcatggccgacagccccgatgacaacatctcagag
accagcgtagctggcttcattgtggtcactggagtagacctggagcgccaggtgttcact
gtgctctcacctgcccctcgcccactgcccaagaacttcctcctcattatggacatccgc
ttcatggacctgaagtag
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