Numida meleagris (helmeted guineafowl): 110402455
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Entry
110402455 CDS
T06015
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110402455 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nmel00536
]
110402455 (COL11A1)
Glycosaminoglycan binding proteins [BR:
nmel00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110402455 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
110402455
NCBI-ProteinID:
XP_021260222
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All DBs
Position
7:11100583..11357770
Genome browser
AA seq
1903 aa
AA seq
DB search
MSSEDLVEPKGQFDRSKLIIWNAKYSAFCPSCSAWKQCRTTETRERGRTRPPAECGRTRC
GAPLSQEKSSLGILWKGRSRYKLKAPGFNSRLRAPSMKMQRWSTRWKTKRWPWDSAVTVL
ITLAVLLQAAEVRGAEPVDVLKVLEFHNSPEGVSRTAGFCTNRRDSKGSDVAYRVSKTAQ
LSAPTKQLYPDGDFPEDFSILMTVKPKKGIQSFLLSVYNEQGIQQVGVEVGRSPVFLFED
QNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVTMIVDCNKKTTKPLERSDKPIVDTN
GITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCEHYSPDCDSPVPNAAQAQDPQVDEY
TPEDFIEYDYEYGDADYKETESVTEGPPLFEETIAQTEANTVDEFQEYSIAENDYGPQTE
APSRTTEANEQNPVEEVFAEEYITGEDYDKKTEETEYGSRGVDLSESDLLVDGDLGEYDF
YEYKEYEEKPTDSTNEEFGPGVPAETDITETSVTQHGAYGEKGQKGEPAVIEPGMLIEGP
PGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGLPGADGLAGPPGTMLMLPFRFGGDG
EKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGRPGPVGGPGAAGAKGESGEPGPQGP
RGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGDRGFDGLPGLPGDKGNRGDRGPQGP
PGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAGIDGPSGPKGNMGP
QGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGKPGLPGLPGSDGPPGHPGKEGQSGE
KGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQ
PGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGA
NGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGKPGPKGTSGNDGPPGPPGERGPQGP
QGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE
RGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGKDGPAGLRGFPGERGLPGAQGPAGL
KGGEGPQGPPGPVGSPGERGAAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGR
DGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGI
AGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGP
PGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGESGTSGPKGERGEKGE
AGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGEKGEDGDPGQ
PGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGAKGEPGAEGAPGKTGPVGPQGPAGK
PGPEGLRGIPGPVGEQGLPGAPGQDGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGP
PGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGPPGPPGLPGPQGPKGSKGSSGPAGQ
KGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYMVSDTGDNILDYTDGMEEIFGSL
NSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPDGEYWIDPNQGCSGDSFKVYCNFTA
GGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLS
ASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSNDEEMSYDNNPYIKALHDGCASRKGY
AKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgaagatctagtggaacctaaaggtcagtttgatagatctaaacttataatt
tggaatgccaaatactcagcattttgtcccagttgttctgcttggaaacaatgcaggact
acagagacaagggagcgaggcaggacgcggcccccggcggagtgcggcaggacgcgctgc
ggggctcccctctcacaggagaagtcatctctgggaatattgtggaaaggacggagtcgg
tataagttgaaggcgcccgggtttaactcacgcttgcgggcgcccagcatgaagatgcag
aggtggtccacacggtggaaaacgaaaaggtggccctgggactcggccgtgaccgtgctc
atcaccctcgctgtccttctccaggctgcggaggtcagaggagctgaaccagttgatgtt
ctaaaagtattagaatttcataattcaccagaaggagtatcaagaacagcaggattttgc
actaacagaagagattcaaaaggttcagatgttgcctacagagtttcaaaaactgcacag
ctcagtgccccaacaaagcaactgtacccagatggagattttccagaagatttttcaata
ttgatgacagtaaaacctaaaaagggtatccagtccttccttctgtctgtttacaatgaa
caaggcattcagcaagtaggtgttgaagttggaagatcccctgtcttcctctttgaagac
caaaatggaaagcctgccccagaagactatcctcttttcagaacagtcaacattgctgat
ggcaagtggcatcgagtagccattagcgtggagaagaaaagtgttacaatgattgttgac
tgcaacaaaaaaacaacaaaaccactggagagaagtgacaaaccaattgtggacactaat
ggcatcactgtctttggaaccaggattctggatgaagaagtatttgagggtgagatccag
cagttgttgattatagctgaccccagagctgcatatgactattgtgagcattatagtcca
gactgtgattccccagtgcccaatgctgctcaggctcaagatcctcaagttgatgagtac
acaccggaagattttatcgaatatgactatgagtatggggatgcagattataaagaaact
gagtctgtaacagagggacccccactgtttgaagagacaatagcacaaacagaggcaaac
actgttgatgaatttcaagagtatagcatagctgaaaatgactacgggccccagacagaa
gctccctccagaactactgaagcaaatgagcaaaaccctgttgaagaagtatttgctgaa
gaatacataactggagaggattatgataaaaaaactgaggaaactgaatatggaagcaga
ggagtagacctcagtgaatctgatcttctggtagatggagatttaggcgaatatgatttt
tatgaatataaagaatatgaagagaaaccgactgattctactaatgaggagtttggtcca
ggtgtacctgcagagactgatatcacagaaacaagcgtgactcaacatggggcctatgga
gaaaaaggacaaaagggagaaccagctgtgattgaacctggtatgctcattgaaggacca
ccaggaccaagaggacctgctggtcttacaggtcccccaggcttacaaggtcctgttgga
cctccaggtgaccctggtgaaaggggtccacctggtcgccctggtctccctggtgctgat
ggtttagcaggtcccccaggtaccatgttaatgctgccgttccgctttggtggagatggt
gagaagggcccaacaatctcagctcaggaagctcaagcacaagctattcttcagcaagcg
aggattgcaatgagaggtccacctggtccaatgggactcactggaagaccaggtcctgtg
ggaggacctggagcagcaggtgctaagggagaaagtggtgaaccaggtcctcagggtcct
cgtggtgttcaaggtgcccctggtccaagtggaaaagctggcaaaaggggacgacctgga
gctgatggtgccagaggaatgccaggagaacctggtgcaaagggtgacagaggatttgat
ggtcttcccggcctccctggtgacaaaggtaacaggggagaccgtggcccacagggacct
cctggcttacctggtgaagatggatcaagaggagaagatggggaagttggaccaagaggt
ctcccaggtgaagctggtccacggggactactgggccccagaggtacacctggtccccct
ggacaacctggcattgcaggtattgatggaccctcaggcccaaagggaaacatgggtcct
caaggggagccaggacctcctggtcagcaaggaatcccaggcccacaagggcttcctggt
ccacaaggtcctattggacctcctggtgaaaaaggacctcaaggcaagcctggccttcct
ggccttcctggttctgatgggcctcctggtcatcctggcaaagagggtcagtctggagag
aaaggagcattggggcctccaggtcctcaaggtccaattggctatccaggtcctcgggga
gtaaagggagctgatggtgttcgtggtctcaagggatccaaaggtgaaaagggtgaagat
ggtttcccaggatttaaaggtgacatgggccttaagggtgatcggggagaagttggccaa
cctggcccacgaggagaagatggtccagaaggtccaaaaggtcgcgcaggtccatctggg
gacccaggtgctgctggtccagctggggaaaagggtaagcttggtgtacctggattgcca
ggatatccaggaagacaaggtccaaagggctcaactggtttcccaggatttccaggtgcc
aatggagagaaaggtgcaaggggattacatggcaaaccaggccccagaggacagcgggga
ccaacaggtccaagaggctcaagaggtccgagaggtcccacgggcaaaccaggtccaaag
ggtacttcaggcaatgatggtccgcctggcccaccaggtgaaaggggaccacaagggcct
caaggacctgttggatttcctggaccaaagggacctccagggccacctggtaaagatggc
ttgcctggacatccaggacaacggggtgagactggatttcaaggaaaaactggtcctcct
ggtcctggtggggttgttggccctcagggtcctactggtgagactggcccaattggtgaa
agaggtcatccaggtcctcctggcccaccgggtgaacaaggcctcccaggtgctgcagga
aaagaaggtgctaagggtgacccaggtcctcaaggtattcctgggaaagatggaccagca
ggtcttcgtggtttccctggagagagaggccttccaggagctcagggtcccgctggtcta
aaaggaggggaaggcccacaaggtccacctggccctgttggttcaccaggggaacgtgga
gcagcaggcactgctggtccaattggtctaccaggtcgtcctggacctcagggtcctcca
ggccctgcaggggagaagggtgctcctggtgaaaaaggtcctcaaggtccagctggacgc
gatggagtacaaggtcctgtaggacttcctggtcctgctggtccaagtggttctcccgga
gaagatggtgacaagggtgaaattggtgaaccgggtcaaaaaggtagtaaaggtgacaag
ggagaaaatggtcctccaggtccaccaggtctccagggtcctgttggtgctcctggcata
gctggaggcgatggggagccaggcccaagaggtcagcaaggaatgtttgggcaaaaaggt
gatgaaggtcctcgaggcttccctggccctccaggccctattggcttacagggtttgcct
ggcccaccaggagaaaaaggtgaaaatggtgatgtgggcccaatgggtccacctggccct
ccaggtccaagaggtccccaaggtcctaatggagcagatggtcctcaaggccccccaggc
tcagttggctctgttggaggtgttggggaaaagggtgaacctggagaagctggtaaccct
ggacctcctggagaatctggaacatctggtccaaaaggtgaaaggggagaaaaaggtgag
gctggtccacctggagcagctggaccaccaggtgctaaaggacctccaggtgatgatggg
cctaagggtaacccaggtccagttggttttcctggagatcctggtccccctggagaacct
ggtccagctggtcaagatggtgttggtggagagaagggtgaagatggtgatcctggtcaa
cctggtccaccaggtccttcaggagaagctggcccacctggtccacctggaaagagagga
ccccctggagcaactggagctgaaggcagacaaggtgaaaaaggtgcaaagggtgaacct
ggtgcagaaggagctcctggaaaaacaggtccagttggtcctcagggacccgcaggaaaa
cctggccctgaaggtctccggggtattcctggccctgtgggagaacaaggtctacctgga
gcaccaggtcaggatggccctcctgggcctctgggtcctcctggcttgcctggtctgaaa
ggagatccaggttccaaaggagagaagggacatcctggtttgattggcctgattggacct
ccaggagaacaaggtgaaaagggtgataggggtcttcctggtccacaggggtctcctgga
gccaaaggtgatgcaggaatttctggtcctgctggtccactcggaccccctggtcctcct
ggtttacctggtccccaaggtccaaaaggttccaaaggatccagtggtcctgctggtcaa
aagggtgacagtggtttacctggcccacctggtcctccaggtcctccaggtgaagtaatt
cagccactgccaatccagtcacccaaaaagactagaagatctcctgattacatggtatct
gatactggtgataatattctggattatactgatggcatggaagagatctttggttcactg
aattcactgaagcaagacattgagcatatgaagtatccaatgggcactcagaacaaccca
gcccgaacttgcaaagacttgcagctctgccacccagacttcccagacggggaatattgg
attgatcctaaccagggttgctctggagactccttcaaagtgtactgcaatttcacagca
ggtggggaaacttgcatctacccagataagaaatctgaaggagttagaatttcatcgtgg
ccaaaggagaatccaggatcttggtttagtgaatttaagcgtggcaaacttctttcatat
ttggatgttgaaggcaattccattaatatggtccaaatgacattccttaaactactgagt
gcctctgccagacaaaatttcacatacaactgtcatcagtccgtggcttggcatgatgca
tcatctgacagctatgacaaagcactaaggttcttaggatcaaatgatgaagagatgtct
tatgacaacaatccttacatcaaagcgcttcatgatggctgtgcgtcaagaaagggctac
gcaaagacagtgattgaaatcaacacacccaaaatagaccaagtgcctatagttgatgtg
atgatcaatgactttggcgatcagaaccaaaagtttggatttgaggttggtcctgtctgc
ttccttggttaa
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