Numida meleagris (helmeted guineafowl): 110406312
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Entry
110406312 CDS
T06015
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110406312 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nmel03000
]
110406312 (CNOT4)
03019 Messenger RNA biogenesis [BR:
nmel03019
]
110406312 (CNOT4)
04121 Ubiquitin system [BR:
nmel04121
]
110406312 (CNOT4)
Enzymes [BR:
nmel01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110406312 (CNOT4)
Transcription factors [BR:
nmel03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110406312 (CNOT4)
Messenger RNA biogenesis [BR:
nmel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110406312 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110406312 (CNOT4)
Ubiquitin system [BR:
nmel04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110406312 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Torus
Rtf2
DZR_2
Nup35_RRM_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
110406312
NCBI-ProteinID:
XP_021268369
LinkDB
All DBs
Position
1:48438988..48514698
Genome browser
AA seq
766 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLATGTVDKNKNKVTALQRYDAPNSSNIKDAWPSLQSSSKSANGLTME
HRKTPPILENGTDPEHMTPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPLGLT
KSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSNDWPTA
PEPQSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDVTRKALADLIEKELSVQD
QPSLSPTSLQNPSPHTTTAKGPGSGFLHPAAPANANSLSSTFPVMPQRFPQFQQHRAVYN
SFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLQPQHSTGLGGIPISDNSSS
VESLNMKEWQDGLRALLPNINISFGGLPNASSPSNANHSVPTSNTATTDSLNWDSSGSWM
DPAIITGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQIPLH
RASWNPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagccctgatgctaaggaagaccctgtggaatgccctctttgcatggagcct
ctggagattgatgacatcaacttcttcccttgcacctgtggctaccaaatctgtcgtttc
tgttggcatcgtatccgcactgatgagaatggactttgtcctgcttgcagaaagccatac
ccagaagatccagcagtgtacaaaccactctcccaggaagagctgcaaaggataaaaaat
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaatcgcaaacatttg
gccagtgtacgggttgtacagaagaatctcgtcttcgtggtagggttatctcagcgccta
gcagacccagaggttttgaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtaattaataacagcacatcatatgcaggctcacagggtccaagtgccagtgcatac
gtaacctacatccggtcagaagatgctctcagagccatacagtgtgtcaataatgtggtg
gtagacggcagaacacttaaggcatcactaggtacaacaaaatactgcagttattttcta
aaaaatatgcagtgtccaaaaccagactgtatgtatctacatgagctaggagatgaagca
gccagtttcacaaaagaagaaatgcaggcgggtaagcaccaagaatatgaacagaaacta
ctgcaagaactatacaaactaaaccccaactttcttcagttagctacgggtacagttgac
aagaacaagaacaaagtgacagcactgcagaggtacgatgcacccaacagcagtaatatc
aaagatgcctggccatcattacagagttcaagtaaatcagccaacggcttaacaatggaa
cacaggaaaacgcctcctatattagaaaatggcacagacccagaacacatgactccagat
ggtgcagactcagatttcggccctatcgacaaaccttcagattccctcagtataggaaac
ggtgacagctcccagcagataacaaacagtgacacaccttcaccaccgcttggtttaaca
aaatccaatccagtcatacccatcagttcatctaaccacagtgcacggtccccttttgaa
ggagctgtaacagaatcacagtcactcttctctgacaacttccggcaccctaaccccatc
cctagtgggcttcctccgttccccagctctccacagacttcaaatgactggcctacagca
ccagaaccacagagcctcttcacatcagaaactataccagtatcttcctccacagactgg
caagcggcttttgggtttggttcctccaaacagcaagaggacgacttagggtttgacccc
tttgacgtcacccgcaaagccttagcagacctgattgagaaggaactgtcagttcaagac
caaccttccctctcgcccacatctcttcagaacccttccccacacactacaactgccaaa
gggccaggctctgggtttctgcatcctgctgcacctgcaaatgccaactctctcagtagc
acctttccagtcatgccacagaggttcccacagtttcaacaacatcgagcagtttacaac
tccttcagttttccaggccaagcagctcgctatccttggatggcctttccacgcaatagc
atcatgcacttgaaccacacagcaaatcccacctcaaatagtaatttcttggacttgaat
ctccaaccacaacacagcacaggtctgggagggatccctatatcagacaacagcagttct
gtagagagtttaaatatgaaggaatggcaggacgggctaagggcacttctaccgaacatt
aacatcagctttggtggactgcccaatgcttcctccccctccaacgccaaccacagtgta
ccaacgtccaacactgccaccaccgacagcctgaattgggacagctctggcagctggatg
gaccccgcaatcatcacaggtatcccagcctccacaggaaacagtttagacacccttcaa
gatgacaatcctccacattggctaaaatctcttcaggccctcacagaggtggacggtccc
agtgcagcgccgtcacagacacaccacagtaaccccttcggcacacagatccctctgcac
agagccagttggaatccctactctcctccttcaaacccaaccagtttccattccccgccc
ccaggctttcagacagccttcagaccccccagtaaaacccccacagatctactacagagc
tcagcgctggatcgtcattag
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