Numida meleagris (helmeted guineafowl): 110407598
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Entry
110407598 CDS
T06015
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
nmel
Numida meleagris (helmeted guineafowl)
Pathway
nmel03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
110407598 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmel03400
]
110407598 (LIG3)
Enzymes [BR:
nmel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110407598 (LIG3)
DNA repair and recombination proteins [BR:
nmel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
110407598 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
110407598
NCBI-ProteinID:
XP_021271105
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All DBs
Position
18:complement(4563672..4579230)
Genome browser
AA seq
985 aa
AA seq
DB search
MPAGSAALTRAARALGLGCPGALLSWPKPWFCCAALPVSRCRLLVSGAARCVHAKPGGGA
ARVLVPLPVHTWLCRASTAAGDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPN
PFTESGGDMKEWYHVKCMFEKLEKARATTKKIEDITDLEGWEELQDGEKELITNLISEAT
SKAASTPKKKATVQAKLTATGQITSPQKDPLANVNPKKFSGFTAKPKNSEEVSANSSHNS
SLSAKKCDPKHKDCLLREFRKLCAMVADKPSYNVKTQIIQDFLKKGTGGDGFHGDVYLTI
KLLLPGIIKIVYNLNDKQIVKLFSRIFNCSQEEMVRDLEQGDVSETIRLFFEQSKSCPPA
AKSLLTIQEVDEFLIQLSKLTKEDDQQSVLQDITRRCTGNDLKCIIRLIKHDLKMNAGAK
HVLDALDPNAYEAFKASRNLQDVVERVLRNQQDALKTPGLKRMLSVQASLMTPVQPMLAE
ACKSIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQ
AFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMD
RPLCERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDIKGNYE
PGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSKGGMMSIFLMGCYDPKSEKWCTVT
KCAGGHDDATLARLQTELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAPVWEITGA
EFSKAEAHTADGISIRFPRCTRIRDDKDWKAATNLPQLKELYQLSKEKADFSVVAGEEEE
STAGSSGENEGNSRSSTPHKTTKTPPNKSPAKAKKPEGTKAVAESPQKPEEKRGEKRKAS
EIEDNGKKILLDIFTGVKLYLSPSVKDFNKIRRYFIAYDGDLVTEYDTASATHVIGDIDE
NPGAKRVSPKWIWECIRKRRLVAPC
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgggcagcgcggcgctcactcgggctgctcgggcactcgggctgggctgcccc
ggggcgctgctctcctggccgaagccctggttctgctgcgctgcccttcccgtctcccgg
tgccggctgctggtgagtggggctgcccgctgtgtgcacgcgaagccgggtggcggtgct
gcgcgcgtcctcgtccctctgcctgtgcacacgtggctgtgccgggccagcacggcggcg
ggggacatggctgagcagaggtactgcgtggactacgccaagcgcggcacggccggctgc
aagaagtgcaaggagaagatcgtgaaggggatggtgcgcatcgggaaaatcgttcccaac
cctttcacggagtccggcggggacatgaaagagtggtaccacgtcaagtgcatgtttgag
aagctggagaaggcccgggccaccaccaagaaaattgaagacatcacggatttggaaggg
tgggaagagctgcaggatggggagaaagaactcatcaccaacctcatctcagaagctaca
tccaaggctgcaagcacgccgaagaaaaaagcaacagttcaggctaagctcactgccact
ggacagataaccagtccccagaaagatcccttggctaatgtcaatccgaagaagttctct
ggcttcacagccaagccaaagaattctgaagaagtgtctgcaaactcctcccacaactcg
agcctgtctgcaaagaaatgtgacccgaagcacaaagactgcttgctgcgagagttcagg
aagctctgtgccatggttgctgacaagcccagttacaatgtgaaaacacagatcatccag
gatttcctgaagaagggaactggaggagatggttttcatggtgacgtatacctgaccatt
aagctactgttaccaggcatcattaaaattgtttacaacttgaatgataagcagattgta
aagctgttcagcagaatttttaactgcagccaagaagaaatggtccgggacctggaacag
ggagacgtttccgagacgatacgcctcttctttgaacagagcaagtcctgtcctccagca
gccaaaagcctcctgaccatccaagaggtagatgagtttctcatccagctatcaaagctt
actaaggaagatgaccagcaaagtgtactgcaagatatcactcgcagatgtacaggcaac
gacctgaaatgcatcatcaggctaattaagcatgacttgaaaatgaacgctggcgcaaag
catgtgttggatgctttggatccaaatgcttacgaggcattcaaagcatcacgcaacctc
caggacgtggtggagcgagtcctgaggaaccagcaggacgctttgaagacgccaggtctg
aagcgaatgctcagtgtgcaggcctctctgatgaccccagttcagcctatgctggctgaa
gcctgcaagtcaattgagtatgccatgaagaagtgcccaaatggcatgtatgcagagatt
aagtatgacggcgagcgggtgcaggtccataaaaacggagatcacttcagctacttcagc
cgaagcctcaaacctgtccttcctcacaaagtagcccacttcaaggacttcatcccccag
gctttccctggtgggcacagtatgatcctggattcagaagttcttctaattgacaataaa
actggcaagccacttccttttggaactcttggtgtacataagaaagctgctttccaagat
gccaacgtctgcttgtttgtgtttgactgcatctatttcaacgacatcagcctgatggac
aggcctctgtgtgagcgtcgtaaatttctgcatgataacatggttgaaatccccaaccgg
atcctgttctcagagatgaagcacgtcacaaaagcttcagatctggcagatatgatcacc
cgagtcatccgtgagggactggagggactggtgttgaaagacataaagggtaattatgaa
ccaggaaaacggcactggctgaaagtgaaaaaggactacctcaatgagggtgcaatggct
gacacagcagacttggtggtgctgggagctttctatgggaaaggcagtaaaggtgggatg
atgtccatcttcctcatgggctgctatgaccccaagagtgagaagtggtgtactgtgacc
aagtgtgccggtggccacgacgatgccaccttggcccgtctgcaaacagagctggatatg
gtgaagatcagcaaggatcctagtaaaatcccaagctggctgaaaattaacaaaatctac
tacccagacttcattgtcccagacccaaagaaagccccagtgtgggagatcacaggggct
gagttctccaaagctgaagcccacactgcagatgggatctccattcgcttccctcgctgc
actcgcattcgagatgacaaagactggaaggcagccaccaacctcccgcagctgaaggag
ctgtaccaactctccaaagagaaagctgacttcagtgttgttgctggggaggaggaggag
tccacagctggcagcagtggagagaatgagggaaattccaggtcttccacaccacacaaa
actactaaaactcccccaaataagtccccagcaaaagccaagaaaccagaaggcaccaaa
gcagtcgctgaatcccctcaaaagccagaggagaaacgaggagagaagcgaaaagcatct
gagatagaagacaatggaaaaaagatactgctggacatattcactggtgtgaagctgtac
ttgtcaccctctgtgaaggacttcaacaaaatccggcgctacttcatcgcatacgatggc
gatctcgtgacagagtatgacacagcctcagcaacgcacgttattggggacattgatgag
aatcctggtgctaagcgggtgtctcccaaatggatctgggaatgcatccggaaaaggaga
ttggtggctccatgctag
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