Nocardioides mesophilus: H9L09_02685
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Entry
H9L09_02685 CDS
T07004
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nmes
Nocardioides mesophilus
Pathway
nmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L09_02685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmes03019
]
H9L09_02685
03009 Ribosome biogenesis [BR:
nmes03009
]
H9L09_02685
Enzymes [BR:
nmes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H9L09_02685
Messenger RNA biogenesis [BR:
nmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L09_02685
Ribosome biogenesis [BR:
nmes03009
]
Prokaryotic type
rRNA processing factors
H9L09_02685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Imm51
Motif
Other DBs
NCBI-ProteinID:
QNN53387
UniProt:
A0A7G9RCR2
LinkDB
All DBs
Position
complement(574362..577664)
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AA seq
1100 aa
AA seq
DB search
MLDDDTTATPTPEDTAAGEAPADRSSDAPGDTSPEDGSTAPAKKAAAKRAPRKAPAKKAA
AAKAPAKRATRKAAAADAGQAPVEGAPTDQTLPGLTDAPAAETAAVSSAETAAVSSAEDA
EQASAPAKKAAARKTAAKRAPRKATAKKAAAEAPADLLGGAAADAADVVTTDEDEEAAAE
AAAAEAALSGTTPAATSAVAPPVVLFQPPDTARATPARRTRKTAATRAAEAAAAAESAES
PTTSAEVDGADVSADDTAAPAPVKRTSRRRTSRTAAAEPAAEETDSEPTEPTEPGAEQAE
DQDDRDDSGDNGEAGGNGRRRRRRGGRRRRKGGNGEDGADAEGSEEETGSPANGQGGQDR
SPNNRSGQGGSNGSNGANGANGEKKDEDAEAEGTSTRRRRRRRRSGDEGDSGDEPENTVT
RVRRPRNPEDEITALSGSTRLEAKKQRRREGREAGRRRAPIVSEAEFLARREAVDRVMVI
RQKKDLTQIAVLEDKVLVEHYVARESQTSLIGNVYLGKVQNVLPSMEAAFIDIGKGRNAV
LYAGEVNWDTLGAGNGPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQISLPGRFLVYV
PDGTTSGISRKLPDTERNRLKSLLKEIVPESAGVIVRTAAEGASEEELTHDVERLTARWS
DIEAKVAKGNAPALLYGEPDLTLKVVRDLFTEDFGKLVVSGDDAWDLVEDYVEHVAPDLS
DRLERYDSEDDVFAAYRIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSG
GNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRMVECLGRDRT
RHQVAEVTSLGLVQMTRKRIGTGLLEAFSENCEHCQGRGLIVHHEPVENRKRVEEEPRRG
RRPRGRQEDERPQGNGGPTAMPSPKDIAAMARAHVDSDGEEGRTPVAPAVEVDGASTAVE
QAVEVPVEQGSEPGRERAGEASQEDRGVEQPRERSRRSRGRGRQQSEERTERTDEGTDRA
EERIERADRTEERTERADRTEERTERTERADRAEERTERADGDRQQAQPTPEPVTEAPSE
QPQPPSAPTQVEPVVSAPGS
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgacgacaccaccgcgacacccacccccgaggacaccgcagccggcgaggca
cctgccgaccgttccagtgacgcgccgggggacacgagccccgaggacggctcgacggcc
cccgccaagaaggcggcggccaagcgggcgccccggaaggcgcccgcgaagaaggccgcc
gcggccaaggccccggcgaagcgggccaccaggaaggccgccgccgccgacgccgggcag
gcacccgtggagggcgcccccaccgaccagaccctccccggcctgaccgacgcgccggct
gccgagaccgcggctgtctcctccgccgagaccgcggccgtctcctccgccgaggacgcc
gagcaggcctccgcgccggcgaagaaggccgccgccaggaagaccgccgcgaagcgggct
ccgcgcaaggcgacggcgaagaaggccgccgccgaggcgccggccgacctgctcggggga
gcggctgccgatgccgcggacgtcgtgacgaccgacgaggacgaggaggccgccgccgag
gctgctgccgccgaggccgccctcagcgggaccaccccggccgccacgtcggccgtagcc
cctccggtcgtgctcttccagccgccggacaccgcccgggccacccctgcccgccgtacc
cgcaagaccgccgcgacgcgggccgccgaggcggccgccgcggcagagagcgccgagagc
ccgacgacgtcggccgaggtggacggcgccgacgtgagcgccgacgacaccgccgccccg
gcacctgtgaagaggaccagccgccggcgcaccagccgtacggcggccgccgagccggcc
gcggaggagaccgactccgagccgaccgagccgaccgagccgggcgccgagcaggctgag
gaccaggacgaccgcgacgattccggcgacaacggggaagccggcggcaacggccgccgc
cgtcgccgtcggggcggacgccgccgtcgcaagggtggcaacggcgaggacggcgctgac
gccgagggctccgaggaggagaccggctcgccggccaacgggcagggcggccaggaccgg
tccccgaacaaccgttccggacagggcggctccaacggctccaacggggcgaacggggcg
aacggggagaagaaggacgaggacgccgaggccgagggcacctcgacccgccgtcgtcgt
cgccgtcgccgttccggtgacgagggcgactccggtgacgagccggagaacaccgtcacc
cgcgtgcgccggccgcgcaaccccgaggacgagatcaccgcgctcagcggctccacccgc
ctcgaggccaagaagcagcgccgccgggagggccgcgaagccggccgccgccgcgcgccg
atcgtcagcgaggcggagttcctggcccgacgtgaggccgtcgaccgggtgatggtgatc
cggcagaagaaggacctcacccagatcgctgtcctggaggacaaggtcctcgtcgagcac
tacgtcgcccgcgagtcgcagacctcactcatcggcaacgtctacctcggcaaggtgcag
aacgtcctgccctcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtc
ctgtatgccggcgaggtcaactgggacacgctcggcgccggcaacgggccgcgcaagatc
gagcaggtgctcaagtccggccagtcggtgctggtgcaggtcagcaaggacccgatcggc
cacaagggcgcccggctgaccagccagatcagcctgccgggccggttcctggtctacgtc
cccgacgggaccaccagcggcatctcgcgcaagctcccggacaccgagcgcaaccggctc
aagagcctgctcaaggagatcgtccccgagtccgccggcgtgatcgtgcggacggcggcc
gagggagccagcgaggaggagctgacccacgacgtggagcggctcaccgcgcgctggagc
gacatcgaggccaaggtcgccaagggcaacgccccggcgctgctctacggcgagccggac
ctcacgctgaaggtggtccgcgacctgttcaccgaggacttcggcaagctggtcgtctcc
ggcgacgacgcctgggacctggtcgaggactacgtcgagcacgtggcgccggacctgtcg
gaccgcctcgagcgctacgacagcgaggacgacgtcttcgccgcctaccggatcgacgag
cagatcgccaagggtctcgaccgcaaggtctggctgccctccggaggctcgctgatcatc
gaccgcaccgaggcgatgaccgtcgtcgacgtgaacaccggcaagttcaccggctccggc
ggaaacctcgaggagaccgtcaccaagaacaacctcgaggccgccgaggagatcgtgcgc
cagctccggctgcgcgacatcggcggcatcatcgtcgtggacttcatcgacatggtgctc
gagagcaaccgcgacctggtgctgcgccggatggtggagtgcctcggtcgtgaccggacc
cgccaccaggtcgccgaggtgacctcgctcggcctggtgcagatgacgcgcaagcggatc
ggcaccggcctgctggaggcgttcagcgagaactgcgagcactgccagggccgtgggctg
atcgtccaccacgagccggtcgagaaccgcaagcgggtggaggaggagccgcgtcgcggt
cgccgcccccgaggtcgtcaggaggacgagcggccgcagggcaacggcggtccgaccgcc
atgccgtcgccgaaggacatcgccgcgatggcgcgcgcccacgtcgactccgacggcgaa
gagggccgcaccccggtcgcgcccgcggtggaggtcgacggtgcgtcgacggccgtcgag
caggcggtcgaggtcccggtcgagcagggctccgagccgggtcgcgagcgggcaggcgag
gcgtcccaggaggaccgtggcgtcgagcagccccgtgagcgcagccggcgctcccgtggc
cgtggccggcagcagtccgaggagcgcaccgagcgcaccgacgagggcaccgaccgcgcc
gaggagcgcatcgagcgcgccgaccggaccgaggagcgcaccgagcgcgccgaccggacc
gaggagcgcaccgagcgcaccgagcgcgccgaccgcgccgaggagcgcaccgagcgcgcc
gacggggaccggcagcaggcccagccgacgccggagccggtcaccgaggccccgtctgag
cagccgcagccgccgagtgccccgacgcaggtcgagccggtcgtcagcgcccccggatcg
tga
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