Nocardioides mesophilus: H9L09_12175
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Entry
H9L09_12175 CDS
T07004
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nmes
Nocardioides mesophilus
Pathway
nmes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nmes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9L09_12175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmes03021
]
H9L09_12175
03400 DNA repair and recombination proteins [BR:
nmes03400
]
H9L09_12175
Enzymes [BR:
nmes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9L09_12175
Transcription machinery [BR:
nmes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9L09_12175
DNA repair and recombination proteins [BR:
nmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9L09_12175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QNN51371
UniProt:
A0A7G9R6Z6
LinkDB
All DBs
Position
2531905..2535786
Genome browser
AA seq
1293 aa
AA seq
DB search
MLDVNFFDKLKIGLATADDIRGWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDARHRDLSSLEAKVDLERKRLENRRDTQIDERAKKLEED
LAALEAEGAKADARRKVKDGAEREMKQLRDRSQRELDRLDEVWNRFKNLKVQDLEGDELL
YREMKNWFGKYFEGHMGATAIQRRLEDFDLDAEVESLRETIATGKGQRKVRALKRLKVVD
AFRKAGNSPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCSAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPTQDMIIGLFFLTREMEGDLAGDG
RAFSSTSEAIMALDRGEITLQSRVRIRFPQVVPPADVTVPEGWEPGQPLLLETTLGRALF
NETLPADYAFVNYEVGKKQLGVIVNDLAERYTKVEVAAALDALKDTGFHWATRSGVTVSI
EDVVTPPRKAEILEVFEEQAKKVQTQFERGLITDDERRQELIEIWTQASNEVAAELEKTF
DKMNPIYMMVHSGARGNMMQVRQIAAMRGLVANPKGDIIPRPIKSNFREGLTVLEYFIAT
HGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKRIGQRLPDGTVIKD
ENAETAAYARSASVEVTHPDTGAVLVEAGGDLGDVKINELVAAGIEEVKVRSVLTCDAKT
GTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPR
VVELFEARTPKGRAPITEAAGRITIEETDKTKKVLVTPDDGSEVQEYPISKRSRLLVGEG
DHVEVGQRLTQGTEDPQDVLRILGVRRAQEHLVDEVQEVYRSQGVSIHDKHIEIIVRQML
RRVLVLEQGDTGLLPSELVDRVRFEEENRRVVSEGGKPAAGRPQLMGITKASLATESWLS
AASFQETTRVLTDAAIHGKSDSLLGLKENVIIGKLIPAGTGLERYRNIRVEPTEEARANA
YSVTGYGDYDYDFGNTGGQAVALDDFDFGSYQN
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtgaacttcttcgacaagctcaagatcggcctggccaccgcggacgacatc
cgcgggtggagccacggcgaggtcaagaagccggagacgatcaactaccgcacgctcaag
cccgagcgtgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgctccaaggtgcgccgcgagcgcatgggccacatcgagctcgccgctccc
gtgacccacatctggtacttcaagggtgtgccgagccggctcggctacctgctggacctg
gccccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacctcggtcgac
gaggacgcgcgtcaccgcgacctgtcctcgctcgaggccaaggtcgacctggagcgcaag
cgcctggagaaccgtcgcgacacccagatcgacgagcgcgccaagaagctcgaggaggac
ctcgcggccctggaggccgagggtgccaaggccgacgcgcgccgcaaggtgaaggacggt
gcggagcgcgagatgaagcagctccgtgaccgctcccagcgcgagctggaccgcctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagatgaagaactggttcggcaagtacttcgagggccacatgggcgccaccgcg
atccagcggcgcctcgaggacttcgacctcgacgccgaggtggagagcctgcgcgagacc
atcgccaccggcaagggtcagcgcaaggtccgtgcgctcaagcgcctcaaggtcgtcgac
gcgttccgcaaggccggcaacagcccccgcgggatggtcctcgacgcggtcccggtgatc
ccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccacctcggacctc
aacgacctgtaccgccgcgtgatcaaccggaacaaccggctcaagcgtctgctcgacctc
ggtgcgccggagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgactcg
ctgttcgacaacggccgtcgtggccgtccggtcaccggcccgggcaaccggccgctgaag
tcgctctcggacatgctcaagggcaagcagggccggttccgccagaacctgctgggcaag
cgtgtcgactactccggccgttcggtcatcgtggtcggtccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgtgcgcgc
ccggtcgtgtgggacgtcctcgaggaggtcatcaccgagcacccggtgctgctgaaccgt
gcacccacgctgcaccgtctgggcatccaggccttcgagccgcagctgatcgagggcaag
gccatccagatccacccgctcgtctgctcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccggatcctgatgctg
tcgacgaacaacatcctgaagccgtccgacggtcgcccggtgacgatgccgacccaggac
atgatcatcggcctgttcttcctcacccgggagatggagggcgacctggccggcgacggc
cgcgcgttctcctcgacctccgaggcgatcatggcgctcgaccggggcgagatcaccctg
cagagccgggtccggatccggttcccgcaggtcgtcccgccggccgacgtcaccgtcccc
gagggctgggagcccgggcagccgctgctgctcgagaccaccctgggccgggcgctgttc
aacgagacgcttcccgccgactacgccttcgtgaactacgaggtcggcaagaagcagctc
ggggtgatcgtcaacgacctggccgagcgctacaccaaggtcgaggtcgccgcggcgctg
gacgccctcaaggacaccggcttccactgggccacccggtccggcgtgacggtctccatc
gaggacgtcgtgacgccgccgcgcaaggcggagatcctcgaggtcttcgaggagcaggcc
aagaaggtgcagacgcagttcgagcgcggtctgatcaccgacgacgagcgtcgccaggag
ctcatcgagatctggacgcaggcctccaacgaggtggcggccgagctcgagaagaccttc
gacaagatgaacccgatctacatgatggttcactcgggtgctcgcggaaacatgatgcag
gtgcggcagatcgccgccatgcgtggtctggtggcgaaccccaagggcgacatcatcccg
cggccgatcaagtcgaacttccgtgagggcctgaccgtcctggagtacttcatcgcgacg
cacggtgcccgcaagggtctggccgacaccgctctgcggacggccgactcgggctacctg
acccgtcgtctggtggacgtctcccaggacgtcatcatccgtgaggacgactgtggcacc
gagcgcggtctgcccaagcggatcgggcagcgtctgcccgacggcacggtgatcaaggac
gagaacgccgagaccgcggcgtacgcccgttcggcgtccgtcgaggtgacccaccccgac
accggcgccgtgctggtggaggccggtggtgacctcggtgacgtcaagatcaacgagctc
gtggccgccggcatcgaggaggtcaaggtccggtccgtcctgacctgtgacgccaagacc
ggcacctgcgccaagtgctacggccgctcgctggccaccggcaagctcgtcgacatcggc
gaggccgtcggcatcatcgcggcccagtcgatcggtgagccgggcacgcagctgacgatg
cgtaccttccacaccggtggtgtggcctccgcggacgacatcacccagggtctgccgcgt
gtggtcgagctgttcgaggcgcgcacccccaagggtcgtgccccgatcaccgaggccgcc
ggtcggatcacgatcgaggagacggacaagaccaagaaggtcctcgtcaccccggacgac
ggctcggaggtccaggagtacccgatcagcaagcgctcgcgcctgctggtgggcgagggc
gaccacgtcgaggtcggccagcggctcacccagggcacggaggacccgcaggacgtcctg
cgcatcctcggtgtccggcgggcccaggagcacctcgtggacgaggtccaggaggtctac
cgcagccagggcgtgtcgatccacgacaagcacatcgagatcatcgtgcggcagatgctg
cgccgggtcctggtgctggagcagggcgacaccggcctgctgccgtccgagctcgtcgac
cgcgtgcggttcgaggaggagaaccgtcgggtggtctccgagggcggcaagcccgcggcc
ggccgtccgcagctgatgggcatcacgaaggcgtcgctggccacggagtcgtggctgtcg
gcggcctccttccaggagacgacccgcgtcctcaccgacgcggcgatccacggcaagtcc
gactcgctgctgggcctgaaggagaacgtgatcatcggaaagctgatcccggcgggcacc
ggtctcgagcgctaccgcaacatccgggtggagccgacggaggaggcgcgtgcgaacgcg
tactccgtcaccggctacggcgactacgactacgacttcggcaacaccggaggtcaggcc
gtggcgctggacgacttcgacttcggttcctaccagaactga
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