Nocardioides mesophilus: H9L09_18440
Help
Entry
H9L09_18440 CDS
T07004
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nmes
Nocardioides mesophilus
Brite
KEGG Orthology (KO) [BR:
nmes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmes03019
]
H9L09_18440 (hrpA)
Enzymes [BR:
nmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H9L09_18440 (hrpA)
Messenger RNA biogenesis [BR:
nmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H9L09_18440 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
NACHT
T2SSE
nSTAND_NTPase5
nSTAND3
PhoH
WHD_HA2
AAA_30
AAA_16
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QNN52428
UniProt:
A0A7G9RA03
LinkDB
All DBs
Position
3880928..3884887
Genome browser
AA seq
1319 aa
AA seq
DB search
MSEASQQDAERDPSGRPPGRGRRRAPRRRASRQGGDGRAAHTGQRRRPRFTPEQVQARRA
QVPAIRYPEELPVSQRRDDLAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVEGMIG
HTQPRRIAARSVAERIAEELGTALGDPENIVGYQVRFTDRSSGSTLVKLMTDGILLAELQ
RDRLLSAYDTLIIDEAHERSLNIDFILGYLKQLLPQRPDLKVVITSATIDPERFAEHFSA
ADGTPAPIIEVSGRTYPVEVRYRPLVEESYADPDIGAEGELVIKDQTEAIVDAVQELVRE
GPGDILVFLPGEREIRDTADVLAKLRPSRLSDAFEVVPLFARLSAAEQHKVFERHTGRRV
VLATNVAETSLTVPGIRYVVDAGYARISRYSARTKVQRLPIEPISQASANQRAGRCGRVE
AGICIRLYSEEDFESRPEFTDPEILRTNLAAVILQMTSLGLGDVARFPFVDPPDQRNVKA
GVQLLEELGALLAPTGSAARKLTGTGRRLAALPVDPRLGRMVLEAEGRGCLREVLVVTAA
LSLQDPRERPVDAQAQADQKHARFKDETSDFLTLLNLWRYVRTQQKELSSSAFRRMCRAE
YLNYLRIREWQDLESQLRQVAKQLKLDVGRPADEVDADGVHQSLLAGLLSHVGLRDPDRR
DYLGARSTRFSIFPGSGLFKKQPQLVMSAELVETSKLWGRVNAAIRPEWAEELGAHLVKR
TYSEPHWSKKRAAVMAYERVTLYGVPLVADRLVSYGKVDQALARELFIRHALVYGEWETR
QKFFAENRALLEEAAELEHRARRRDIVVDEHSLFDFYDARVGAEVVSGAHFDSWWKRTRQ
EHPDLLTFDPTMLVHDTAAEVTAADYPDVWREGDLVLPLSYQFEPGTAADGVSVDVPVAT
LNQVDSTAFTWQVPGLRAELVTALIRSLPKQLRVNFVPAPNVAREFLAAASPGEESLLDA
LERFLRGRNGVHVPPEAWDWTKVPDHLRPTFRVVDERGRVVGEGKDLEKLKEPLRPKFRA
AMEEAAAASGLDVTGRTSWSFGTVEQTFTQTRAGHEVRGFPGLVDEGRTVGLQVFGSEAE
RDASHRRGLRRLLMLAVPSPARSIADALSNTEKLSLAGSPYPSVADLLEDCVAAAVDDLV
ERHGGPVWDEASFGRLAGEVRGDLADTTRVVLHDVVRVLAAWREVDKTLSGSVDLSLLSA
VADMKAQVGRLVHRGFVSEAGTTQLRQLPRYLAAVADRRARLTTGGGAARDRRLMDQVGA
LQEAYLHRIAALPDGRLPSAALVQVRWMLEEYRVSLWAQTRGTAYPISDTRIRKALDAA
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggccagccagcaggacgccgagcgcgacccctccgggcgtccgccggggcgc
ggccgtcgccgcgcgccgcgacgccgggcctcccgccagggtggcgacggtcgcgccgcg
cacaccgggcagcggcgccggccgaggttcaccccggagcaggtgcaggcccgccgcgcg
caggtcccggcgatccggtaccccgaggagctgccggtcagccagcgccgcgacgacctc
gccgcggcgatccgcgaccaccaggtggtgatcgtcgcgggggagaccgggtcgggcaag
accacccagctgcccaagatctgcctggagctcggccggggcgtggagggcatgatcggc
cacacccagccgcgccggatcgccgcgcgcagcgtcgccgagcggatcgcggaggagctg
ggcacggcgctgggcgacccggagaacatcgtcggctaccaggtccggttcaccgaccgg
tccagcggcagcaccctggtgaagctgatgaccgacgggatcctgctggccgagctgcag
cgcgaccggctgctctcggcgtacgacaccctgatcatcgacgaggcccacgagcgcagc
ctcaacatcgacttcatcctcggctacctcaagcagctgctgccgcagcgccccgacctc
aaggtcgtgatcacctccgcgacgatcgacccggagcggttcgccgagcacttcagcgcc
gcggacggcaccccggcgccgatcatcgaggtgtccggccggacctacccggtggaggtg
cgttaccgcccgctggtcgaggagtcctacgcggaccccgacatcggcgccgagggcgag
ctcgtcatcaaggaccagaccgaggcgatcgtcgacgcggtgcaggagctggtccgcgag
ggccccggcgacatcctggtgttcctgcccggcgagcgcgagatccgcgacaccgcggac
gtgctggcgaagctccgcccgagccggctcagcgacgccttcgaggtggtgccgctgttc
gcgcggctctccgccgccgagcagcacaaggtcttcgagcggcacaccggccgccgcgtc
gtgctcgccaccaacgtcgccgagacctccctgaccgtgcccgggatccggtacgtcgtc
gacgccggctacgcccggatctcccgctacagcgcccgcaccaaggtgcagcggctgccg
atcgagccgatcagccaggcctcggcgaaccagcgcgccggccgctgcggccgcgtcgag
gccggcatctgcatccggctctactccgaggaggacttcgagtcgcggccggagttcacc
gacccggagatcctgcgcaccaacctcgcggccgtgatcctgcagatgacctcgctcggg
ctcggcgacgttgcccgcttcccgttcgtcgatccgcccgaccaacgcaacgtcaaggcc
ggcgtgcagctgctcgaggagctcggcgcgctgctcgcgccgaccggctcggcggcccgc
aagctgaccggcaccggccgccggctcgccgcgctgccggtggacccgcggttgggccgg
atggtgctggaggccgagggccgcggctgcctgcgcgaggtgctcgtggtcaccgcggcg
ctctccctgcaggacccccgggaacgaccggtggacgcgcaggcgcaggccgaccagaag
catgcccgcttcaaggacgagacctccgacttcctcacgctgctgaacctgtggcgctac
gtccgcacccagcagaaggagctctcctccagcgccttccggcggatgtgccgggcggag
tacctcaactacctgcggatccgggagtggcaggacctcgagtcccagctgcgccaggtc
gccaagcagctgaagctcgacgtcggccgcccggccgacgaggtcgacgccgacggcgtg
caccagtcgctgctcgctggtctgctctcgcacgtcgggctgcgagaccccgaccgtcgt
gactacctgggcgcccggtcgacccggttctcgatcttccccggctcggggctgttcaag
aagcagccgcagctggtgatgagcgcggagctggtggagacctcgaagctgtggggccgg
gtcaacgccgcgatccggccggagtgggccgaggagctcggcgcgcacctggtcaagcgc
acctactccgagccgcactggagcaagaagcgcgccgcggtgatggcctacgagcgggtg
acgttgtacggcgtcccgctggtcgccgaccggctggtctcctacggcaaggtcgaccag
gcgctcgcccgggagctgttcatccggcacgcgctggtgtacggcgagtgggagacccgg
cagaagttcttcgccgagaaccgtgcgctgctcgaggaggccgccgagctcgagcaccgc
gcccggcgccgcgacatcgtcgtcgacgagcacagcctcttcgacttctacgacgcgcgg
gtcggggccgaggtggtctccggcgcgcacttcgactcgtggtggaagcggacccggcag
gagcacccggacctgctcaccttcgacccgacgatgctcgtgcacgacaccgcggccgag
gtgaccgcggcggactacccggacgtgtggcgcgagggcgacctggtgctgccgctgagc
taccagttcgagcccggcaccgcggccgacggcgtgagcgtcgacgtaccggtggccacc
ttgaaccaggtggactccaccgcgttcacctggcaggtgcccgggctgcgggcggagctg
gtgaccgcgctgatccgctcgctgcccaagcagctgcgggtcaacttcgtgccggcgccc
aacgtcgcccgggagttcctggcggccgcgtcgccgggcgaggagtcgctgctggacgcg
ctggagcgcttcctgcgcggccgcaacggggtgcacgtgccccccgaggcgtgggactgg
acgaaggtgccggaccacctgcggccgaccttccgggtcgtcgacgaacgtggccgggtg
gtcggggagggcaaggacctcgagaagctcaaggagccgctgcggccgaagttccgggcg
gcgatggaggaggcggcggcggcctccgggctggacgtcaccggccgcacgtcgtggagc
ttcggcaccgtcgagcagaccttcacccagacccgcgccggccacgaggtgcgcggtttc
ccgggtctggtcgacgagggccggaccgtggggctgcaggtgttcgggtccgaggcagag
cgggacgcctcgcaccggcgggggctgcggcggctgctgatgctggcggtcccgtcgccg
gcccggtcgatcgccgacgcgctgtccaacaccgagaagctgtcgctggcaggatcgccg
tacccgtcggtggccgacctgctcgaggactgcgtcgcggccgccgtcgacgacctcgtc
gagcggcacggcggcccggtctgggacgaggcctccttcggccggctcgccggcgaggtt
cgcggcgacctcgcggacaccacccgggtggtgctccacgacgtggtgcgcgtcctcgcc
gcgtggcgcgaggtcgacaagaccctgagcggctcggtggacctctccctgctctccgcg
gtggccgacatgaaggcgcaggtcggccggctggtgcaccgcggcttcgtctccgaggcg
ggtacgacgcagctgcggcagctgccgcgctacctcgccgccgtcgcggaccgccgggcc
cggctgaccaccggcggcggggccgcccgggaccgccggctgatggaccaggtcggcgcg
ctgcaggaggcgtacctgcaccgcatcgccgcgctgcccgacgggcggctgccgagcgcg
gcgctggtgcaggtgcggtggatgctcgaggagtaccgcgtcagcctctgggcgcagacc
cgcggcacggcgtacccgatctccgacactcggatccgcaaggcgctcgacgcggcctga
DBGET
integrated database retrieval system
