KEGG   Nocardioides mesophilus: H9L09_20650
Entry
H9L09_20650       CDS       T07004                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
nmes  Nocardioides mesophilus
Pathway
nmes03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nmes00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    H9L09_20650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nmes03019]
    H9L09_20650
Messenger RNA biogenesis [BR:nmes03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     H9L09_20650
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: QNN55195
UniProt: A0A7G9RHX0
LinkDB
Position
4320049..4321695
AA seq 548 aa
MPRNGLRVVGLGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEEHQPGIDVILPDFSWIRDR
LDSIVAVVLTHGHEDHIGGVPYLLRERADIPVVGSRLTLALIDAKLKEHRIKPRLMPVKE
GETKKLGPFDLEFLAVNHSIPDGLAVAIRTPAGVVLHTGDFKMDQFPLDGRITDLRGFAR
LGEEGVDLFMVDSTNAEVPGFTMSERDLSPAIDTVFRTAPRRIIVSSFASHVHRIQQVLD
AAHAHGRKVAFVGRSMVRNMGVARDLGYLRVPENLIVPLEQLERMKADKVALVCTGSQGE
PMAALSRMANRDHKIRVGEGDTVLMASSVIPGNENAISGVINGLTRWGANVVHKGNAKVH
VSGHASAGELVYCYNIVRPGNVMPVHGEWRHLRANGDLAISTGIDPSRVVLADDGVVVDL
VDGRAKITGKVPAGNVYVDAATVGGATEASLRDRRTLAEEGVVTVLAIVDADSGKLAEPP
DFLIRGFVHDQAAFEAAVPVVAKTLERAALEGIGDSHQLEQMITRDVGQWAHKKFRRSPL
IISIVIDA
NT seq 1647 nt   +upstreamnt  +downstreamnt
ctgccccgcaacgggctccgcgtcgtcggactcggcgggctcggtgagatcggccgcaac
atgaccgtcttcgagcacgccggaaagctcctgatcgtcgactgcggcgtgctcttcccc
gaggagcaccagcccggcatcgacgtgatcctgcccgacttcagctggatccgggaccgg
ctcgacagcatcgtcgcggtggtgctgacccacgggcacgaggaccacatcggtggcgtc
ccctacctgctgcgcgagcgcgcggacatcccggtggtcgggtcccgcctgacgctggcg
ctgatcgacgccaagctcaaggagcaccggatcaagccgcggctgatgccggtcaaggag
ggcgagaccaagaagctcggccccttcgacctcgagttcctcgcggtcaaccactcgatt
ccggacggcctggccgtcgccatccgcaccccggcgggcgtggtgctgcacaccggcgac
ttcaagatggaccagttcccgctcgacggccggatcaccgacctgcgcggtttcgcgcgg
ctcggcgaggagggcgtcgacctgttcatggtcgactccaccaacgccgaggtgcccgga
ttcacgatgtccgagcgcgacctcagcccggcgatcgacaccgtgttccgcaccgcaccc
cgccgcatcatcgtctccagcttcgccagccacgtgcaccgcatccagcaggtcctcgac
gccgcgcacgcgcacggccgcaaggtcgccttcgtcggccgttcgatggtgcgcaacatg
ggggtcgcccgcgacctcggctacctccgcgtcccggagaacctgatcgtgccgctcgag
cagctcgagcggatgaaggccgacaaggtcgcgctggtctgcaccggctcccagggcgag
ccgatggccgcgctctcccggatggccaaccgtgaccacaagatccgggtcggcgagggc
gacaccgtgctgatggccagctcggtcatcccgggcaacgagaacgccatctccggcgtg
atcaacggactgacccggtggggcgccaacgtggtccacaagggcaacgccaaggtccac
gtctccggccacgcgagcgcgggcgagctcgtctactgctacaacatcgtccgacccggc
aacgtgatgccggtccacggcgagtggcggcacctgcgcgccaacggcgacctcgccatc
agcaccggcatcgatccttcacgcgtggtgctcgccgacgacggggtggtcgtcgacctg
gtcgacgggcgcgccaagatcaccgggaaggtgcccgcgggcaacgtctacgtcgacgcc
gcgaccgtcggcggcgccaccgaggcgtcgctgcgggaccggcggacgctggccgaggag
ggcgtcgtgacggtgctggcgatcgtcgacgccgacagcggcaagctggcggagccgccg
gacttcctgatccgcggcttcgtccacgaccaggcggcgttcgaggccgcggtgcccgtg
gtcgccaagacgctggagcgtgcggcactcgaagggatcggcgactcccaccagctcgag
cagatgatcacccgcgacgtgggccagtgggcgcacaagaagttccgtcgcagcccgctg
atcatctccatcgtcatcgacgcctga

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