Nocardioides mesophilus: H9L09_20650
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Entry
H9L09_20650 CDS
T07004
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nmes
Nocardioides mesophilus
Pathway
nmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L09_20650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmes03019
]
H9L09_20650
Messenger RNA biogenesis [BR:
nmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L09_20650
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QNN55195
UniProt:
A0A7G9RHX0
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Position
4320049..4321695
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AA seq
548 aa
AA seq
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MPRNGLRVVGLGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEEHQPGIDVILPDFSWIRDR
LDSIVAVVLTHGHEDHIGGVPYLLRERADIPVVGSRLTLALIDAKLKEHRIKPRLMPVKE
GETKKLGPFDLEFLAVNHSIPDGLAVAIRTPAGVVLHTGDFKMDQFPLDGRITDLRGFAR
LGEEGVDLFMVDSTNAEVPGFTMSERDLSPAIDTVFRTAPRRIIVSSFASHVHRIQQVLD
AAHAHGRKVAFVGRSMVRNMGVARDLGYLRVPENLIVPLEQLERMKADKVALVCTGSQGE
PMAALSRMANRDHKIRVGEGDTVLMASSVIPGNENAISGVINGLTRWGANVVHKGNAKVH
VSGHASAGELVYCYNIVRPGNVMPVHGEWRHLRANGDLAISTGIDPSRVVLADDGVVVDL
VDGRAKITGKVPAGNVYVDAATVGGATEASLRDRRTLAEEGVVTVLAIVDADSGKLAEPP
DFLIRGFVHDQAAFEAAVPVVAKTLERAALEGIGDSHQLEQMITRDVGQWAHKKFRRSPL
IISIVIDA
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
ctgccccgcaacgggctccgcgtcgtcggactcggcgggctcggtgagatcggccgcaac
atgaccgtcttcgagcacgccggaaagctcctgatcgtcgactgcggcgtgctcttcccc
gaggagcaccagcccggcatcgacgtgatcctgcccgacttcagctggatccgggaccgg
ctcgacagcatcgtcgcggtggtgctgacccacgggcacgaggaccacatcggtggcgtc
ccctacctgctgcgcgagcgcgcggacatcccggtggtcgggtcccgcctgacgctggcg
ctgatcgacgccaagctcaaggagcaccggatcaagccgcggctgatgccggtcaaggag
ggcgagaccaagaagctcggccccttcgacctcgagttcctcgcggtcaaccactcgatt
ccggacggcctggccgtcgccatccgcaccccggcgggcgtggtgctgcacaccggcgac
ttcaagatggaccagttcccgctcgacggccggatcaccgacctgcgcggtttcgcgcgg
ctcggcgaggagggcgtcgacctgttcatggtcgactccaccaacgccgaggtgcccgga
ttcacgatgtccgagcgcgacctcagcccggcgatcgacaccgtgttccgcaccgcaccc
cgccgcatcatcgtctccagcttcgccagccacgtgcaccgcatccagcaggtcctcgac
gccgcgcacgcgcacggccgcaaggtcgccttcgtcggccgttcgatggtgcgcaacatg
ggggtcgcccgcgacctcggctacctccgcgtcccggagaacctgatcgtgccgctcgag
cagctcgagcggatgaaggccgacaaggtcgcgctggtctgcaccggctcccagggcgag
ccgatggccgcgctctcccggatggccaaccgtgaccacaagatccgggtcggcgagggc
gacaccgtgctgatggccagctcggtcatcccgggcaacgagaacgccatctccggcgtg
atcaacggactgacccggtggggcgccaacgtggtccacaagggcaacgccaaggtccac
gtctccggccacgcgagcgcgggcgagctcgtctactgctacaacatcgtccgacccggc
aacgtgatgccggtccacggcgagtggcggcacctgcgcgccaacggcgacctcgccatc
agcaccggcatcgatccttcacgcgtggtgctcgccgacgacggggtggtcgtcgacctg
gtcgacgggcgcgccaagatcaccgggaaggtgcccgcgggcaacgtctacgtcgacgcc
gcgaccgtcggcggcgccaccgaggcgtcgctgcgggaccggcggacgctggccgaggag
ggcgtcgtgacggtgctggcgatcgtcgacgccgacagcggcaagctggcggagccgccg
gacttcctgatccgcggcttcgtccacgaccaggcggcgttcgaggccgcggtgcccgtg
gtcgccaagacgctggagcgtgcggcactcgaagggatcggcgactcccaccagctcgag
cagatgatcacccgcgacgtgggccagtgggcgcacaagaagttccgtcgcagcccgctg
atcatctccatcgtcatcgacgcctga
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