Nocardioides mesophilus: H9L09_20945
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Entry
H9L09_20945 CDS
T07004
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nmes
Nocardioides mesophilus
Pathway
nmes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L09_20945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmes03019
]
H9L09_20945
03009 Ribosome biogenesis [BR:
nmes03009
]
H9L09_20945
Enzymes [BR:
nmes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L09_20945
Messenger RNA biogenesis [BR:
nmes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L09_20945
Ribosome biogenesis [BR:
nmes03009
]
Prokaryotic type
rRNA helicases
H9L09_20945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
HEM4
XdhC_C
Motif
Other DBs
NCBI-ProteinID:
QNN52860
UniProt:
A0A7G9RB85
LinkDB
All DBs
Position
complement(4376590..4378389)
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AA seq
599 aa
AA seq
DB search
MSSDVESDPRPSFADLGIDERILRALADVGYETPSPIQAATIPALLAGRHVVGLAQTGTG
KTAAFAVPILSQIDLKQKAPQALVLAPTRELALQVSEAFERYASHLPGLHVLPVYGGQAY
GVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLTQLRFLVLDEADEMLKMGFQEDVETILA
DTPADKHVALFSATMPAQIRRISKKYLTDAAEITVKNKTVTAANTTQRYLMVTHQQKLDA
LTRVLEIENFEGMIIFVRTKQATEVLAERLRARGFSAAAINGDVAQVQRERTIDQLRDGR
LDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRTGDALSFVTPRERH
LLKAIERATRQPLTLMPLPSVEDVNTNRVAKFTESITTALGSDKLGFFRELISDYEQQHD
VPATDIAAALAVLVQDDEPLLLAPEAETPQRAFEGKRESGGVWDHEKGRRRDRDERPKRR
ESGPRKGRSSVPLAPYTIAVGKRHRVEPRQIVGALANEGGLNRGDFGHIDIRGDHSVVEL
PADLPPETWRALENTRISGRLIALREGGGQDSGAERSPGAERPDGPRKKPRTKKADRPS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctgacgtcgagtccgacccgcgccccagcttcgccgatctcggcatcgacgag
cgcatcctgcgggcgctcgccgacgtcggctacgagacgccctcgccgatccaggcggcg
acgatccctgctctgctggccgggcgccacgtcgtcgggctggcccagaccggcaccggc
aagaccgcggcgttcgcggtgccgatcctcagccagatcgacctcaagcagaaggcgccg
caggcgctggtgctcgcgccgacgcgcgagctggcgctgcaggtctcggaggccttcgag
cgctacgcctcgcacctgcccgggctgcacgtgctgccggtctacggcggccaggcgtac
ggcgtccagctctccgcgctgcgtcgcggggtgcacgtcgtggtgggcacgccgggccgg
atcatggaccacctcgagaagggcaccctcgacctcacgcagctgcgattcctggtcctc
gacgaggccgacgagatgctcaagatggggttccaggaggacgtcgagacgatcctggcc
gacaccccggcggacaagcacgtcgcgctcttctcggccacgatgccggcgcagatccgc
cggatctcgaagaagtacctcaccgacgccgccgagatcaccgtcaagaacaagaccgtg
accgcggccaacaccacgcagcgctacctgatggtcacccaccagcagaagctcgacgcc
ctcacgcgggtgctggagatcgagaacttcgagggcatgatcatcttcgtccgcaccaag
caggcgaccgaggtgctcgcggagcggctccgggcccgcggcttctcggcggcggcgatc
aacggcgacgtcgcgcaggtgcagcgggagcggaccatcgaccagctgcgcgacggtcgg
ctggacatcctggtggccaccgacgtggcggcccgcggcctcgacgtggagcggatcagc
cacgtcgtgaactacgacatccccaccgacaccgagtcctacgtgcaccggatcggtcgc
accggacgggccggccgcaccggtgacgcgctgtcgttcgtgacgccgcgcgagcggcac
ctgctcaaggcgatcgagcgggccacccggcagccgctcaccctgatgccgctgccgagc
gtcgaggacgtcaacaccaaccgggtcgccaagttcaccgagtcgatcaccaccgcactg
gggtcggacaagctcggtttcttccgcgagctgatctccgactacgagcagcagcacgac
gtgccggccaccgacatcgcggcggcgctggcggtgctggtccaggacgacgagccgctg
ctgctggctccggaggccgagaccccgcagcgggcgttcgagggcaagcgcgagtcaggc
ggcgtctgggaccacgagaagggccgccgccgcgaccgggacgagcggcccaagcgccgc
gagagcggcccccgcaagggccgctcgtcggtgccgctggcgccctacacgatcgccgtc
ggcaagaggcatcgtgtcgagccgcgccagatcgtgggcgcgctggccaacgagggcggc
ctgaaccgcggcgacttcggccacatcgacatccggggggaccactccgtcgtcgagctt
cccgccgacctgccgccggagacgtggcgggcgctggagaacacccggatctccggtcgc
ctgatcgcgttgagggaaggcggcggccaggacagcggtgcggaacgctccccgggtgcc
gagcgcccggacgggccgcgcaagaagccccgcaccaagaaggccgaccggccttcctga
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