Nonlabens marinus: NMS_0427
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Entry
NMS_0427 CDS
T09770
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nmf
Nonlabens marinus
Pathway
nmf03030
DNA replication
nmf03430
Mismatch repair
nmf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NMS_0427
03430 Mismatch repair
NMS_0427
03440 Homologous recombination
NMS_0427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmf03032
]
NMS_0427
03400 DNA repair and recombination proteins [BR:
nmf03400
]
NMS_0427
Enzymes [BR:
nmf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NMS_0427
DNA replication proteins [BR:
nmf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NMS_0427
DNA repair and recombination proteins [BR:
nmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NMS_0427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
BAO54436
UniProt:
W8VZE5
LinkDB
All DBs
Position
complement(450545..454900)
Genome browser
AA seq
1451 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDVDNWPRVIQMAWQLHDDMGNLVDHQDYLIKPDGFDIPY
DAERIHGISTALAQEEGIPLVEMLEKFNAALAKTTFVVGQNLKFDLNVTGAEFERAGITN
SLQETPVLDTCTEHTAQLCQLPGGRYGKFKLPTLTELHEFLFQQPFNEAHNATADVEATT
RCFFELVRLQQYTVAQLKQDADYLVRFRESNPTTIQPAGLQHVNLKKASAQLVEHTEPEI
TKQEIAENLDELSTAPFTHLHNHSQFSILQSTASVQDLVAAAAANEMPAVAMTDHANMMG
AFHFVKAVKAYNASLAGNEDLQDRQPMKPIIGCEFQVCEDMNDKSIKDNGYQIVMIAKNK
NGYHNLAKMASKAYTDGFYYLPRIDKKLVERHKDDLIILTGNLYGEVPSKILNVGEKQAE
EALLWWKEKFGEDLYIEIMRHGQEDEQRANAVLIELAKTHDVKLVASNNTYYVHKEDANA
HDILLCVKDNEKQATPIGRGRGYRYGLPNQEYYFKSSREMKELFKDLPEAILNVQEVVDK
VEAYELARDVLLPAFDIPQEFVDPTDAENKTKNGENAYLRHLTYEGAKMRYGDDFSDEIR
ERLDFELEVIKNTGYPGYFLITWDFIKAAREMDVAVGPGRGSAAGSAVAYCLKITNVDPI
HYDLLFERFLNPDRVSMPDIDIDFDDENRYKVMDYVIEKYGASQVAQIITYGTMAAKSSI
RDCARALDLPLQDADRVAKLIPDFAKLKKIFALEDNEISSSFRGEDAEMVRELRGLAEGN
DPVAEMLKQARILEGSVRNTGVHACGVIITPDDLTNFVPVATAKNSDLYVTQFDNEVVES
AGLLKMDFLGLKTLSQIKDTVAIIKERHGIALDIEAIPLDDDKTYELFQRGETTAIFQYE
SVGMQKYMRELKPTQFADLIAMNALYRPGPLEYIPEFIDRKHGRKEIVYDLEAMEEYLKE
TYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQMATLQKMKPQFLDAGEGNGHDRT
VLEKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAATLSNNMNQIKDVTK
FMDECRRMGLDVLGPDVNESNYKFTVNAKGAIRFGMGAVKGLGFNAVMTIIENRKEKPYH
SIFDMAKRIDLRAANKKSFEALALSGGFDGLGGENRAQFFHEMDNGQIFLELVVKYAQKF
QENENSAQVSLFGEASDVQIPEPQLPICEDWGTMEKLKREKEVVGIYISGHPLDDYKKEM
EFFCNSELANFNELETLVNRDLSFCGVVTECRHAVSKAGKGYGFFSVEDYNDTYEFRLFG
EDYLKFRHFLVPNTFLHAKVKIQQGWPDKNTGKPREPRVLFTHMQQLQDVMSSAAKSLTI
EFHVSEVMDKRVALLKEVLEKHKGDQQLYFNLKDHEEKISINMSSRMQKVNVTAELLEML
DKAEIGYGVNG
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaatctttgacactgaaactactggacttcctaaacgttgggatgcgcccatc
acagatgttgataactggcctcgagtgatacaaatggcttggcagctgcacgacgatatg
ggaaacctggtcgatcatcaagattacctgatcaaaccagacgggttcgacataccttat
gatgcagagcgtatacacggtatatctaccgctctagctcaagaagaggggattccccta
gtggaaatgctagagaaatttaatgcagctttagccaaaactacttttgttgtaggccaa
aacttaaagtttgacttaaatgtgaccggtgccgagtttgagcgtgctggcatcactaat
tcattacaagaaactcctgtgctcgatacttgtacagagcatacagcgcaactgtgtcag
ctgcctggaggtcgttacggcaagttcaagctgcctacattgacggagctgcatgagttt
ttattccaacaaccattcaatgaagcccataatgccacggcagatgttgaggcaactaca
agatgtttctttgagttggttaggcttcagcagtacactgtcgctcaattaaagcaagat
gcagattatttagttcgctttcgcgaaagcaacccaacaaccatacagcctgcaggatta
cagcatgtcaatttaaagaaagcttctgcgcaactggtagaacacaccgagccagaaata
actaagcaagaaattgctgaaaacctggatgagctcagtaccgcacctttcacacacctg
cacaaccacagccagttttccatactgcaatccaccgctagcgttcaggatttagtagct
gctgctgctgcaaatgaaatgcctgcagtagccatgacagatcatgcaaatatgatgggt
gcttttcattttgtaaaagcagtaaaggcttataatgccagccttgccggcaatgaagat
cttcaagaccgtcagcccatgaaacctattataggatgtgagtttcaggtttgtgaagac
atgaatgacaagtccatcaaggacaacgggtatcagatcgtgatgattgccaaaaacaag
aacggctatcacaaccttgcaaaaatggcgagcaaagcctacaccgacgggttttattac
ctacctcgtattgacaaaaagttggttgagcggcataaggatgacctgattattcttaca
ggtaatttatatggagaagtcccttctaaaattttgaacgtaggagaaaagcaggcagag
gaagccttgctatggtggaaagaaaaattcggcgaagatctatacatagagatcatgcgc
catggtcaggaagatgaacaacgggccaatgcggtattgattgaactcgctaaaacccat
gatgtaaagctggtggcttcaaacaacacctactacgtccataaagaagatgctaatgcg
catgatatattattatgtgtcaaggataatgaaaaacaggcaacacctataggtcgcggg
cgcggatacaggtatggtttaccaaatcaagaatactacttcaaatccagccgggaaatg
aaagagctatttaaagaccttcctgaagcgattttaaatgttcaagaagtagtagataaa
gtagaagcttatgagctagctcgcgatgtactgttgcctgcctttgatattccacaagaa
tttgtggaccctactgatgctgagaataaaacgaagaacggagagaatgcttatttaagg
cacttgacttatgaaggggctaagatgcgctatggcgatgattttagcgatgagatcagg
gaacgactggactttgaattagaggttattaaaaacacagggtatccaggatactttttg
atcacctgggactttatcaaggcagctagagaaatggatgtggcagtaggtcctggtcgt
ggatctgctgcaggtagtgctgttgcctactgtttaaagattacgaatgtagatcccata
cattatgacctgctttttgagcgtttcctaaacccagatagggtatccatgccagatatt
gatattgactttgacgatgaaaatcgatacaaagtgatggattatgtgattgaaaaatat
ggagcctcacaagtagcacaaatcattacctacggcaccatggcagcaaaatcttctatt
agagattgtgcacgagccttagatttaccgctacaagacgctgatcgtgtagcaaaactt
attcctgattttgcgaagctgaaaaagatttttgcactagaagacaatgaaataagcagc
agcttccgtggagaggacgctgaaatggtacgcgaactacgcggccttgcagaaggcaac
gaccctgtggctgaaatgttgaaacaagcgcgaattcttgaaggatctgtaagaaatacg
ggagtccatgcgtgtggagtaattatcacgccagacgatttgaccaactttgttccagtc
gctaccgcaaaaaactctgatttatatgtcactcaatttgacaatgaagtcgtagaaagc
gcagggttactgaaaatggactttttaggattgaaaaccttgagtcaaattaaggatact
gtggccataatcaaagagcgccatggtatagctctggacattgaagccataccgctagat
gatgacaagacctatgaattgttccagcgaggggaaaccactgccattttccagtatgaa
agtgtcggaatgcaaaaatacatgcgggagctcaagcctacccagtttgccgacttgatc
gccatgaacgccttgtaccgtcctggaccgctggaatacattccagaatttattgatcgc
aagcatggccgcaaggaaattgtttacgatctagaggccatggaggaataccttaaggaa
acttatggaattaccgtctatcaggagcaggtaatgctactttctcaaaaactggcaaac
ttctcaaaaggtgatgccgatgtcttgagaaaagcaatgggtaaaaagcaaatggcgacc
ctgcaaaagatgaagccccaattcttagatgctggagaagggaatggtcacgatagaacg
gtgcttgaaaaagtctggaaagactgggaagcatttgcatcttatgcttttaacaagtct
cactccacttgttatgcctggattgcctatcaaaccgcttatttgaaagcaaattatcca
gcagagttcatggcggctactttgtcaaataacatgaaccagatcaaggatgtcactaag
tttatggatgaatgccgtcgtatgggacttgatgttttaggtccagatgtgaatgagtcc
aattataaatttactgtaaatgctaaaggtgctatccgctttggaatgggagcagtgaaa
ggacttggcttcaatgcagtaatgaccataatcgaaaaccgaaaggaaaagccttatcac
agcatttttgatatggccaagcgtattgatttgagagcagctaacaaaaaatcttttgaa
gcattagcattaagcggtggttttgacgggctaggaggtgagaatcgggcgcagtttttc
catgaaatggacaacggccagatatttttagagttggtagtgaaatacgcacaaaaattc
caagaaaacgaaaacagcgcacaggtaagcctttttggcgaggctagtgacgtgcagata
ccagagcctcagctacctatttgtgaggactggggaaccatggagaagttgaagcgagaa
aaagaagtagtaggaatttatatttctggacacccgctagatgattataaaaaggagatg
gaattcttctgcaacagcgaactcgctaattttaatgagttagaaactttagtaaatcgt
gacctaagtttttgcggtgtggtaacggaatgccgtcatgccgtgagcaaggcagggaaa
ggctacggcttcttttcagtagaagattataacgatacgtatgagttccgattgtttggg
gaagactatttgaaattcaggcattttttagtgcctaatacatttcttcatgctaaggtt
aaaatccagcaaggttggccagataaaaatacaggtaagcctagagagccacgagtactt
tttacccatatgcagcaattacaagacgttatgtcaagtgctgcaaaatctttaacgata
gagtttcatgtgagcgaggtcatggataagcgcgtggcgctgttgaaggaagtactggaa
aaacataagggagatcaacaattatatttcaacttgaaagatcatgaggaaaaaatatcc
attaatatgtcgagtagaatgcaaaaagtaaacgtcactgcagagctgctagagatgctt
gataaggcagagattggctatggagtcaatgggtaa
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