Nonlabens marinus: NMS_0519
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Entry
NMS_0519 CDS
T09770
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
nmf
Nonlabens marinus
Pathway
nmf02020
Two-component system
nmf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nmf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NMS_0519
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NMS_0519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmf03021
]
NMS_0519
Transcription machinery [BR:
nmf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NMS_0519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Tenui_N
DUF1722
HTH_12
Dam
LacI
VPg
Motif
Other DBs
NCBI-ProteinID:
BAO54528
UniProt:
W8VUE4
LinkDB
All DBs
Position
550842..552227
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AA seq
461 aa
AA seq
DB search
MKLIQLPTQAFEQRVKSELEENPALDDGKEKSDDEYDEFSNENEYDDAPEPDINVDDYLS
DDEIPDYRTRANNYSSDDEETSIPYASGKSFTQTLKDQLNTRRLSEQDRGIAEFLVGSID
NSGYIRRSMEDITDDLAFTMNIYTEVSEVEKVLKMVQDLDPAGVGARDLRECLVIQLSRK
RNSPTADLALKIIKDSFDAFSKKHYQKLIAKYDITEDQLREAIEEISHLNPKPGSSYAGG
STRIVEQVVPDFTIRIKEGELELTLNGRNTPELHVSRDYSNMLKGYKEAKEKTKSQKDAV
MFIKQKLDGAKWFIEAIKQRQETLFMTMSSIMNYQKKYFLTGDERNLRPMILKDIADEIQ
MDVSTVSRVANSKYVDTPYGTKLIKEFFSESMTNTDGEEVSTREIKKILENVIGEESKRK
PLTDQKLAEILKDKGYPIARRTVAKYREQLDIPVARLRKQI
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgatacagttgccgacgcaagcttttgaacaacgtgtaaaatctgaacttgag
gaaaatccagctttagatgacggcaaagaaaagagtgacgatgaatatgatgaattttcc
aacgagaatgaatatgatgatgcgccagagccggacatcaatgtagacgattatttgagt
gatgatgaaattccagattaccgcaccagagccaacaattacagcagtgacgatgaagaa
accagcataccctatgcctccggtaagtctttcacacaaacccttaaagaccaattaaac
actcgacgtttaagtgagcaagaccgcggtattgctgaatttttagtaggtagcatcgac
aacagcggatacatacgccgcagtatggaggatatcactgacgaccttgcgttcaccatg
aatatttatacggaagtttctgaagtagaaaaagttcttaaaatggtgcaggatttagat
ccagccggtgtgggagctcgagatttgcgagaatgtctggtgattcagctttcgcgaaag
cggaacagccccacagcagatcttgcattgaagattattaaagattcctttgatgctttc
agcaagaagcactaccaaaaattgatcgctaaatacgatatcacggaggatcagctgcgg
gaagctattgaagaaataagtcatttgaacccaaaaccaggtagttcttatgcaggagga
agcacccgaatcgtggaacaagtggttcctgattttacgataagaattaaagaaggagaa
ttagaattgacattaaacggtagaaatactccagagcttcatgtaagccgggattattca
aacatgttaaagggctataaagaagctaaggaaaaaactaaatctcaaaaagatgcggtg
atgttcattaaacaaaagcttgatggtgcaaaatggttcattgaagccattaaacagcgt
caggaaacgctttttatgactatgtcgtccattatgaactatcagaagaaatacttcctg
acaggcgacgagcgcaacttgcgcccgatgatattaaaagatattgcagatgaaatccag
atggatgtgtctactgtttctagggtggctaactctaagtatgtggatacgccttacggc
actaaactaattaaagaattcttctcagaatccatgactaacactgatggagaagaagtt
tctactcgagaaatcaagaagattctagagaacgttataggtgaagaaagcaaacgcaaa
ccacttacagatcaaaagctggcagaaattctaaaagataaaggatatcctattgcaaga
cgtacggtggcaaaataccgagaacaactcgatattcctgtagcccgtttgcgtaaacaa
atctaa
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