Nonlabens marinus: NMS_0628
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Entry
NMS_0628 CDS
T09770
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nmf
Nonlabens marinus
Pathway
nmf03410
Base excision repair
nmf03430
Mismatch repair
nmf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NMS_0628
03430 Mismatch repair
NMS_0628
03440 Homologous recombination
NMS_0628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmf03400
]
NMS_0628
DNA repair and recombination proteins [BR:
nmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NMS_0628
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NMS_0628
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NMS_0628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAO54637
UniProt:
W8VWC0
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All DBs
Position
complement(664044..665702)
Genome browser
AA seq
552 aa
AA seq
DB search
MQAKLAQELDIDLVLAGLLVQRGVDTFAKAKSFFRPSLDELHDPFLMKDMQLAVDRIAKA
VAQKENILVFGDYDVDGTTSVALVSSFLQSYYPNVATYIPDRYEEGYGVSYQGIDYAHDN
EFTLIIALDCGVKAVDKIAYAKEKGVDFIVCDHHRPGKNLPDAVAILDPKREDCTYPYDE
LCGCGVGFKLCQAITITNNWDFQILIPYLDLVATAIGADIVPMTGENRILTYHGLHVINT
SPRAGFQAIISQLDKKDKLTSTDVVFTIAPRINAAGRMKHGLHAVQLLTETDVDKAVVYA
KEIEQFNIDRKETDRYITQAALQQILDTGAQDRYSTIVFDPSWHKGVIGIVASRLMETYY
RPTLVFTKSGDFLAASARSVKGFDVYDALEQCSEFIEQFGGHMYAAGLTLRAENFEAFKN
RFEEVVCATIQNQQRTEEISIDCRLPLGSINGKFYRILQQMAPFGPKNMTPVFLTEKVTD
TGYGKKVGSGGEHLKLCLSQDQGITSYDAIGFNKGSKWEELQQKKLLKIAYSLDKNTWQG
VSKIQLRLRDIQ
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagctaaactagcgcaagagcttgatatcgatttagtcttggctggtttgttagtg
cagcgaggggtggacactttcgcgaaagcgaaatcattttttagaccctcgttagatgaa
ctgcatgacccgttcttaatgaaggatatgcaattagcggttgaccgtattgctaaagca
gtggcgcaaaaggaaaacatcttagtatttggtgattatgatgtggatggaactaccagt
gttgcgttagtttcctcttttttacagtcgtattatcctaatgtagctacctatattcca
gaccgttatgaggaaggttatggggtgagttatcaaggtattgactatgcacacgacaat
gagttcacattaataatcgcattagattgcggagtgaaagcggtggataagatcgcttac
gcaaaagaaaaaggcgttgattttatagtctgtgatcaccacaggcctggaaaaaaccta
ccagacgctgtggcaattcttgacccgaaacgggaagattgcacttacccatatgatgaa
ctttgtggatgtggtgtagggttcaagttgtgccaggcgattaccataacaaacaattgg
gattttcaaatactaattccttatttggatctggtagctactgccataggagcagatatc
gttcccatgactggagagaatagaatcttgacctatcatggactgcatgtgatcaacact
agtcctagagcaggatttcaagcaattatatcacagcttgataaaaaagataagctgacc
tctacagatgttgtgttcaccatcgctcctagaatcaatgcggccggaagaatgaagcac
ggtttgcatgcggtccagttgctcactgaaactgatgtggataaagctgttgtctatgct
aaggaaattgaacaattcaatatcgatcgcaaagaaaccgatagatacatcactcaagct
gcattacagcaaatacttgatacaggagctcaagatcgatacagtactattgtttttgac
ccatcctggcataaaggcgtaataggtattgttgcttcaagacttatggaaacgtattac
cgccctacactggtgtttactaaaagtggtgattttctagccgcaagtgcgcgtagcgtt
aaaggtttcgatgtatacgatgcgctagagcaatgttctgaatttatagaacaattcggc
ggacacatgtatgctgcgggacttaccttaagggctgagaattttgaagcttttaaaaat
agatttgaagaggtggtttgtgctaccattcaaaaccagcagcggacagaggaaatatcc
attgactgtcgattgcccttaggctctataaacggtaaattttatagaatcttacagcag
atggcgccattcggtcctaaaaatatgactcctgtattcttgactgaaaaagttacagat
actgggtatggtaaaaaggtagggagtggaggagaacacttaaagctctgtttgagccag
gatcaaggtataacgagctacgatgcgatcggttttaataagggaagtaaatgggaagaa
ttgcaacaaaagaaacttttaaaaattgcctattccctagataagaatacctggcaagga
gtttcaaaaatccaattaagattgagagatattcagtag
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