Nonlabens marinus: NMS_1538
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Entry
NMS_1538 CDS
T09770
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nmf
Nonlabens marinus
Pathway
nmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMS_1538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nmf03021
]
NMS_1538
03019 Messenger RNA biogenesis [BR:
nmf03019
]
NMS_1538
Transcription machinery [BR:
nmf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NMS_1538
Messenger RNA biogenesis [BR:
nmf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NMS_1538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
BAO55547
UniProt:
W8VX97
LinkDB
All DBs
Position
complement(1636176..1637969)
Genome browser
AA seq
597 aa
AA seq
DB search
MFQIADLKSKKLPELQEIAQGLNVPKFRTMRKLDLVYKILDLQAANPDVVKKLDADTTAP
AAADSKDTQKERQPRPAAKKQQPRERKSNPKNQKDSKDSSTDQKESPADNKQGSKKPNPR
NPKSKDDRKDTNDKPNPRHKNQRDKNDSDGKNDKNGNDNRNDNRRDTKNEKDGNDNRNDN
RRNDKNDTDGNDNRNPRQKNQRQSNQNNVPKGNKDTRNRYRDPEFEFDGIIESEGVLDMM
PDGYGFLRSSDYNYLASPDDIYVSQSQVRLFGLKTGDTVLGMVRPPKEGEKYFPLIKISQ
INGLDPSVVRDRVSFEHLTPLFPDEKFNLADRRSSVSTRVMDLFAPIGKGQRGMIVAQPK
TGKTMLLKDIANAIAANHPEVYQLILLIDERPEEVTDMQRHVDGEVIASTFDKEAHDHVR
VANIVLEKAKRMVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDANALHKPKRFF
GAARNIEGGGSLTIIATALTETGSKMDEVIFEEFKGTGNMELQLDRNISNRRIFPAIDLT
SSSTRRDDLLLDKETVQRMWIMRKYLADMNPVEAMEFMSQRIKQTRNNEEFLATMND
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaatagctgatttaaaatcaaagaaacttcctgaacttcaggaaattgctcag
ggcttgaacgtcccaaaattccgtaccatgcgcaaacttgatcttgtctacaagatccta
gacctacaagctgcaaacccggacgtagttaaaaaactagatgcagacaccacagctcca
gctgcggcagactctaaagacactcaaaaagagcgacagcctagacctgctgcaaaaaag
caacaacctagagagcgtaaatcaaaccctaaaaatcaaaaggactctaaagattcttct
acagatcaaaaagaatctcctgctgataacaagcaaggttctaaaaagccaaatcctaga
aacccaaaatccaaggatgaccgcaaagacactaacgacaaaccgaatccacgtcataag
aaccaaagggacaaaaacgattccgacggtaaaaatgataagaacggcaatgacaatcgc
aatgacaaccgtcgcgacactaaaaatgaaaaagacggcaacgacaatcgtaatgacaat
cgtcgcaacgataagaacgatacggatgggaatgacaaccgtaatccacgtcaaaaaaat
caacgccaaagcaatcaaaacaacgttcctaaagggaacaaagacacacgcaaccgttac
cgcgatccagagtttgaatttgatggaatcatagaaagtgaaggagttcttgacatgatg
cctgatggatatggcttcctacgcagtagtgactacaactacttagcctctcctgatgat
atttatgtgtctcaatcacaagtccgtttgttcggcttgaagactggtgataccgtttta
ggaatggtacgcccacctaaagaaggtgaaaagtatttcccgctgatcaaaatttcacaa
atcaatgggttagaccctagcgtcgttcgcgaccgtgtatcttttgaacacttaactcca
ttattcccagacgagaaattcaatcttgcagacagacgctccagtgtttctacccgtgta
atggatctttttgctcctataggtaaaggacaacgtggaatgatcgttgcccagcctaaa
acaggtaagacgatgttattgaaagacattgcaaacgctattgccgctaaccatcctgaa
gtttaccagttaattttattgattgatgagcgtcctgaggaagttacagatatgcaacgt
cacgttgatggtgaagtgattgcttcaacatttgacaaagaagctcacgatcacgtacgt
gtagcaaacattgtacttgaaaaagcaaaacgtatggtagaatgtggtcacgatgtggtg
atcctattagattctattacacgtttagcaagagcctacaacaccgtacaaccagctagt
ggtaaagtactttctggtggtgtggatgcaaatgcattgcacaaaccgaaacgtttcttt
ggagcggctcgtaatattgaaggtggaggttccctgaccattatcgcaacagctttgact
gagacaggctctaaaatggacgaggtcatctttgaagaatttaaaggaacgggtaacatg
gaactgcaattggatcgtaacatttccaaccgtcgcatcttccctgccatcgaccttacc
tcatcttctactcgtcgtgatgacttactattagataaggaaacggtacaacgcatgtgg
attatgagaaagtacctggctgatatgaatccggtagaagctatggaattcatgtctcaa
cggatcaagcaaaccagaaacaacgaggaattcctcgctacaatgaatgactag
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