Natrialba magadii: Nmag_0405
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Entry
Nmag_0405 CDS
T01176
Symbol
cdc48b
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nmg
Natrialba magadii
Pathway
nmg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Nmag_0405 (cdc48b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmg03019
]
Nmag_0405 (cdc48b)
03009 Ribosome biogenesis [BR:
nmg03009
]
Nmag_0405 (cdc48b)
04131 Membrane trafficking [BR:
nmg04131
]
Nmag_0405 (cdc48b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nmg04147
]
Nmag_0405 (cdc48b)
Messenger RNA biogenesis [BR:
nmg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Nmag_0405 (cdc48b)
Ribosome biogenesis [BR:
nmg03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Nmag_0405 (cdc48b)
Membrane trafficking [BR:
nmg04131
]
SNARE
SNARE associated proteins
Others
Nmag_0405 (cdc48b)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Nmag_0405 (cdc48b)
Exosome [BR:
nmg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Nmag_0405 (cdc48b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
TIP49
AAA_33
AAA_5
AAA_22
AAA_14
NPHP3_N
nSTAND3
RNA_helicase
AAA_28
AAA_7
Mg_chelatase
AAA_25
AAA_3
IstB_IS21
ABC_tran
DUF815
TsaE
Sigma54_activat
AAA_18
AAA_11
AAA_17
AAA_24
ATPase
AAA_30
AAA_lid_PRS2_C
NB-ARC
Parvo_NS1
Zeta_toxin
SLFN-g3_helicase
PhoH
ATPase_2
Bac_DnaA
bpMoxR
Zot
HJURP_C
Motif
Other DBs
NCBI-ProteinID:
ADD03993
UniProt:
D3SXV3
LinkDB
All DBs
Position
398347..400611
Genome browser
AA seq
754 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAIDRVSMRELDLENGDYILIEGSDDSQAVARVWPGYPEDEGR
GIIRIDGRLRQEADVGIDDRVSVEPADVNPATSVTVALPQNLRIRGDIGPLVRDKLSGQA
VTEGQTVPFSLSFGPMASSGQSVPLKIASTSPSGTVVITDSTDINISETPAEQVGAGGEP
SAEGVPNVTYEDIGGLDNELDQVREMIELPMRHPELFQQLGIEPPKGVLLHGPPGTGKTL
MAKAVANEIDADFQTISGPEIMSKYYGESEEQLREVFEEAEENAPAIVFIDELDSIAAKR
EEAGGDVERRVVAQLLSLMDGLEERGRVTVIAATNRIDDIDPALRRGGRFDREIEIGVPD
KDGRKEILQVHTRGMPLVDDIDLDRYAENTHGFVGADLESLAREGAMNALRRIRPDLDLE
SEEIDAEVLETLQVTEGDFKEALKGIQPSAMREVFVEVPDVTWNDVGGLGDTKERLRETI
QWPLDYPEVFEQMDMQAAKGVLMYGPPGTGKTLLAKAVANEAQSNFISIKGPELLNKYVG
ESEKGVREIFEKARSNAPTVIFFDEIDSIAGERGQRQGDSGVGERVVSQLLTELDGLEEL
EDVVVIATTNRPDLIDSALLRPGRLDRHVHVPVPDEAARERIFEVHTRDKPLADAIELEW
LAEETEGYVGADIEAVCREASMAASREFINSVDPDDIDDTIGNVRIGKEHFEHALEEVQP
SVTPETRERYEEIEQQFQQAEPAQEQDQLGRTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttactgtcaaaccactcaaacagaaggacgcaggccgcggactggccgccatc
gaccgcgtgtcgatgcgcgaactggatctcgaaaacggggattacatcctgatcgaggga
agcgacgacagccaggccgtcgctcgtgtctggccgggctatcccgaggacgaaggtcgg
ggtattattcgcatcgacggtcgcctccgacaggaggcagacgtcgggattgacgaccgg
gtctcggtcgaacccgcagacgtcaaccccgccacctcggttaccgttgcactcccgcag
aaccttcgtattcggggcgatatcggcccactcgtccgagacaagctgtccggacaggcc
gtcactgagggtcagacagtcccattctcgctttcgttcggaccgatggccagttccggc
cagtcggtccccctgaagattgcgagcacctcgccgtcgggaacggtcgtcatcactgac
tcgaccgacatcaacatctccgagacgccggccgaacaggtcggtgccggcggcgaaccg
agcgctgaaggcgtcccgaacgtcacctacgaggacatcggtggcctggacaacgagctt
gatcaggttcgtgagatgatcgaactgccgatgcgccacccagagctgttccagcagctt
gggatcgagccaccgaagggcgtcctgctgcacggcccgcccggcaccggcaagacgctg
atggcgaaagcagtcgccaacgaaatcgacgccgacttccagacgatctccgggccggag
atcatgtcgaagtactacggcgagtccgaagagcaactccgcgaggtcttcgaagaagca
gaggagaacgcacccgccatcgtcttcatcgacgaactcgactccatcgccgccaagcgc
gaggaagccggcggcgacgtcgagcgacgcgtggtcgctcaactgctctcgctgatggac
ggcctggaggagcgcggtcgcgtcaccgtcatcgccgcaaccaatcgaatcgacgacatc
gaccccgcactccgccgcggcggtcgcttcgaccgcgagatcgagattggcgtccccgac
aaagatggccgcaaggagatcctgcaggtccacacccgcggcatgcccctggtggacgac
atcgaccttgaccgctacgccgagaatacccacggcttcgtcggtgccgacctcgaatcg
ctcgcccgcgagggcgcaatgaacgccctgcgtcgcatccgccccgacctcgacctggag
tctgaggagatcgacgccgaggtcttagagaccctgcaggtcacggagggcgacttcaag
gaggcactcaagggaatccagccctcggcgatgcgcgaagtcttcgtcgaagtcccggac
gtcacctggaacgacgtcggcggactcggcgacaccaaagaacgcctgcgtgagacgatc
cagtggccgctcgactaccccgaggtcttcgagcagatggacatgcaggccgcgaagggt
gtgctgatgtacggcccacccggtaccggcaagacgctactcgccaaggccgtcgccaac
gaggcccagtcgaacttcatctcgatcaagggccccgaactgctgaacaagtacgtcggc
gagtccgagaagggcgtccgcgaaatcttcgagaaggcccggtcgaacgctccgaccgtg
atcttcttcgacgaaatcgactccatcgcgggcgaacgcggccagcgccagggtgactcc
ggcgtcggcgaacgcgtcgtctcccagctgctgaccgaactcgacggcctcgaggaactc
gaggacgtcgtcgtcatcgcgacgaccaaccgcccggacctgatcgactcggctctgctc
cgtcccggccgcctcgaccgtcacgtccacgtcccagtgccggacgaagcggcccgcgag
cgcatcttcgaggttcacacccgcgacaagccactggccgatgcaatcgaactcgagtgg
ctcgccgaagagacggagggctacgtcggtgccgacatcgaagcggtctgtcgcgaggcg
tcgatggcagccagccgcgagttcatcaactcggtcgacccggacgatatcgacgatacg
atcggcaacgtccgcatcggcaaggagcacttcgagcacgcactcgaggaggtccagcca
agcgtgaccccggagacgcgcgagcgctacgaggagatcgaacagcagttccagcaggca
gagccggcccaggaacaggaccagctcggtcggacgttccagtag
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