Natrialba magadii: Nmag_0414
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Entry
Nmag_0414 CDS
T01176
Symbol
rtcB1
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nmg
Natrialba magadii
Brite
KEGG Orthology (KO) [BR:
nmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nmg03016
]
Nmag_0414 (rtcB1)
Enzymes [BR:
nmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nmag_0414 (rtcB1)
Transfer RNA biogenesis [BR:
nmg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nmag_0414 (rtcB1)
Prokaryotic type
tRNA splicing ligases
Nmag_0414 (rtcB1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADD04002
UniProt:
D3SXW2
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All DBs
Position
407373..408839
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AA seq
488 aa
AA seq
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MSNDTFDADGITLEQVREYVWEIPQEGDMRVPARVLASEALLEEIKEDKTLEQITNTTHL
PGITTNAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCGVRMMRTNLTYDELK
GQEAELVDSLFANIPSGLGGGGVVEAGVDTVDEILARGVDWALENGHAVEDDLLHCEDEG
MREGAKPEKVSQKAKDRGKNQIGSLGSGNHFLEVQRVTDIFDPEVGEAFGLEEDQIVVLI
HCGSRGLGHQTCNDYLRKIEQQHQGLLDQLPDKELAAAPAGSQLAEDYYGAMNAAINFAW
VNRQLIMHRTRQVFERVFDRSWESMEMDLLYDVAHNIAKKEMHEVDGEERELYVHRKGAT
RAFPAGHPEVPKAYRDVGQPVIIPGSMGAGNYVLRGGENSMDLTFGSTAHGAGRLMSRTQ
AKNEFWGGDVQDELEEQEQIYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVART
FPVCNIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgacacgttcgacgccgacggcatcacgctcgagcaagtgcgtgagtacgtc
tgggagataccacaggagggggacatgcgtgttcccgcgcgagtgcttgccagcgaggct
ctgctggaggaaatcaaggaagacaagacactcgaacagatcacaaacacgacccacctg
ccggggattaccaccaacgcgatctgtatgcccgacggccaccagggctacggcttcccc
gttggcggggtcggcgcgctggacgccgagaacggctgcatctcgccgggagctgtcggc
tatgatatcaattgcggcgtccggatgatgcgcacaaatctgacgtacgacgaactcaag
ggtcaagaagcggaactcgtcgactcactatttgcaaacattccgtcaggtctgggtggt
ggcggcgtcgtcgaagccggcgtcgacaccgtcgacgagatcctcgcccgtggcgtcgac
tgggcactcgagaacggccacgcagtcgaggacgatctcctgcactgcgaggacgagggg
atgcgtgagggtgccaagccggagaaagtgagccagaaggccaaggatcgcgggaagaac
cagatcggttcgcttggctccggaaatcacttcctcgaagtccagcgcgtgacggacatc
tttgaccccgaagtcggcgaggcgttcggactcgaggaagaccagatcgtcgtcctgatc
cactgtggctcgcgcgggctgggccaccagacgtgtaacgactaccttcgtaagatcgag
caacagcatcagggcctgctggaccagttgccggacaaggaactggctgcagcgcccgcg
ggctcacagctcgccgaggactactacggtgcgatgaacgcggcgatcaacttcgcgtgg
gtcaaccgtcagctgattatgcaccgcacgcggcaggtgttcgagcgcgtcttcgaccgc
tcgtgggagtcgatggagatggatctgctgtacgacgtggcacacaacattgcgaagaag
gagatgcacgaagtcgatggagaagagcgcgaactctacgtccaccgcaagggtgcaacg
cgcgcgttccccgctggccaccccgaggtcccgaaagcatatcgcgacgtcggccagccg
gtcatcatccccggcagcatgggcgcgggcaactacgttctccgcggcggcgagaactct
atggacctcacgttcggctccaccgcccacggcgcggggcggctgatgagtcgtacccag
gcgaaaaacgagttctggggcggcgacgtacaggacgaactcgaggagcaggagcagatt
tacgtgaaggcacagtcgggtgcgacggtggccgaggaagcgccgggcgtctacaaggac
gtcgacgaggtcgtccgtgtctcggacgagttgggtatcggcgacaaggttgcgcggacg
ttcccggtctgtaacatcaagggatag
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