Neobacillus mesonae: CHR53_00325
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Entry
CHR53_00325 CDS
T06691
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nmk
Neobacillus mesonae
Pathway
nmk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHR53_00325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmk03400
]
CHR53_00325 (mfd)
Enzymes [BR:
nmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHR53_00325 (mfd)
DNA repair and recombination proteins [BR:
nmk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHR53_00325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
RecG_dom3_C
UB2H
IstB_IS21
VP9
AAA_14
Motif
Other DBs
NCBI-ProteinID:
AZU59857
UniProt:
A0A3Q9QVS4
LinkDB
All DBs
Position
61603..65145
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AA seq
1180 aa
AA seq
DB search
MNGLKSLFLHQEDIRACIAGVDGGLKEQLIAGLSGSARTVLTSALYEQMKRPILLVTHNL
LQAQKLYDDLVNLVSEKEVYLFPANELIAAEMSIASPELKAQRIEALNYWSKQKQGILIV
PIAGLKKILPPKPLWQKYQLSFKVGEDIDPDEILNTFITMGYTRQEMVSTPGEFSVRGGI
IDIYPLTEANPLRMELFDTEIESIRYFSLEDQRSKEKVSEVLIGPATELLIEPDNYSRMT
EQLESGLAASLRKVKDEKAKLQLSQNISFELEQLRHNQKPDQVFKYLSLAYESPNSLLDY
LPQNGLVIIDEISRVQEMNDSLVKEEAEWYTSLLSEGQIIHDLHISHNLQTLMHKGQFPL
LYFSLFLRHVANTSPQNIINVSCKQMQNFHGQMHLLKSEIERWTKGNYAVVFLGPDEERV
KKLERVLEDYEISASIVDGNQQMLPGKVQIIRGNLHTGFEMALQRIAVITEEELFHKRVK
KSASRQKLSNAERIKSYSELKIGDYVVHVNHGIGKYLGIETLVINGIHKDYLHIRYQGTD
KLYVPVEQIDLVQKYVGSEGKEPKVYKLGGSDWKKVKKKVQSSVEDIADDLIKLYAEREA
AVGFGFSPDGDLQREFEASFAYQETDDQLRSIHEIKKDMERPRPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVAFLVPTTILAQQHYETLRERFQDYPINIGLLSRFRSKKQQTETLK
GLKAGSVDIVIGTHRLLSKDIVYRDLGLLIIDEEQRFGVTHKEKIKKLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGALVREAIERELARDGQVYFLYN
RVEDIERKAEEISMLVPDARVTCAHGQMSENELESVMISFLAGEFDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSTLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKAELGDPHAEV
KTTVEIDLEIDAYIPDSYIKDGHQKIEMYKRFRGIEVLEDVEELQAEMLDRFGEYPDEVS
YLFHIAEMKVLAIQNGVESIKQLKQDVTILLTEEVTNTMDGSKLFHIGSQFGRSVTPGME
GKKLKIVVNTKGYQTAQWLHIVFEMVKGIILAKKGQENPV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgaatggattaaaatcattatttcttcatcaagaggatatccgcgcttgtatagcgggt
gtggatgggggattaaaagaacaattaattgccgggctatcaggttctgctcggacagtg
ttaacatctgctctttatgaacaaatgaaacggccaattctgctcgttacccataatcta
ttacaggctcaaaaactctatgatgaccttgtaaatctagtaagtgaaaaggaagtatat
ttgtttccggcaaacgaattaattgctgctgagatgagcattgccagtccggagcttaag
gcgcaaagaatagaagccttaaattactggagcaagcaaaaacaggggattctaattgtg
ccgattgccgggttaaaaaaaatcctgccgcctaaaccattatggcaaaaataccagcta
tcctttaaagtcggcgaagatatcgatccggatgaaattttaaatacgtttataacaatg
ggctatacgcgccaagagatggtgtcaacaccgggggaattcagtgtaagagggggaatt
attgacatatacccgcttactgaagcaaatccgctaagaatggagttatttgataccgaa
attgaatccatccgttatttttccttagaggatcagcgttcaaaggaaaaggtttcagag
gtattgattggaccggcaacagaactgctcatagagccggataattacagccggatgaca
gagcagctcgaatccgggctagctgcaagcttaagaaaagtgaaggatgaaaaagctaaa
ttgcagctctcgcagaatatcagctttgaactagagcaattgagacataatcaaaagcct
gatcaagtttttaagtatttgtcgctcgcctatgaaagccctaatagtttactagattat
ttaccgcaaaacggtttggttatcattgatgaaataagccgtgtgcaggaaatgaatgat
tcgcttgtaaaagaggaagcggagtggtacacatctctcttaagtgaaggccagattatt
catgaccttcatatatcgcataatttgcagacgcttatgcataaagggcaatttccactc
ctgtatttttcattgtttttgcggcatgttgccaataccagcccgcaaaatatcattaat
gtatcctgtaagcaaatgcagaatttccacggacagatgcatttgttaaaatcggaaatt
gagcgctggacaaaaggaaattatgcggttgttttcttagggcctgatgaagaaagggtc
aaaaagttagaaagagttcttgaagactatgaaatctctgcaagtattgtagatggcaat
cagcaaatgcttcccggcaaggttcaaattatcaggggaaatctgcatacagggtttgaa
atggcgcttcaaagaattgctgtcattacagaagaggagctatttcataaacgggttaaa
aaatcagcgagccgtcaaaagctatcaaatgccgaaagaattaaaagctactctgaactc
aaaattggcgattatgtcgtccatgtcaatcatggaatcggtaaatatttagggattgag
acgcttgtcattaacggcattcataaggattacctccatatccgctatcaaggaaccgac
aagctgtatgttcctgtggagcaaattgatcttgtccaaaaatatgtcggctcggaaggc
aaggaaccaaaggtctataagcttggcggcagtgattggaagaaggtaaagaagaaggtc
caatcctccgttgaagatattgctgatgatctaatcaagctatacgctgaacgagaagca
gcagtaggctttggtttttctccagatggcgatttgcagcgggaatttgaggcgagcttt
gcctatcaggaaacagatgatcaattgcgttcgattcacgagattaagaaggatatggag
cggccgcgtccaatggaccgcttattatgcggggatgtcggttatggaaaaacagaggta
gccatacgtgctgccttcaaagccattgcagacgggaaacaggtagcctttttggtgcca
acgacaatcctggctcagcagcattatgagacactgcgagaacgtttccaagactatcca
atcaatattgggttattaagccgtttccgttcgaaaaagcagcaaacggaaacattaaaa
gggttaaaggccgggtcggttgatattgtgattggaacccaccgcctgctttcaaaggat
attgtttaccgtgatctaggattgttaattattgatgaagagcagcgttttggcgttacc
cataaggaaaaaattaagaagttgaaaacaaatgtcgatgtcttaacgttaaccgccaca
ccaattccaagaacacttcatatgtcgatgcttggagttcgtgatttatcagtcattgaa
acaccgccggaaaatcgcttcccggtgcaaacatatgtaatggaatataacggcgcgctt
gtcagagaagctattgaacgggagcttgcccgcgacggacaagtttactttttatataac
agggttgaggatattgaacgcaaagcagaagaaatttcgatgcttgtgcccgatgcccgc
gtaacctgtgcccacgggcaaatgtcggaaaatgaattagagtcggtaatgatcagcttc
ctggccggagagtttgatgtgcttgtcagcacaaccattatcgaaacaggagtcgatatt
ccgaatgtcaatacactaattgtctttgatgcggatcggatggggctgtcaacactttac
cagctgcgcggccgtgtgggcagatccaatcgtgtggcttatgcttattttacctaccga
aaagacaaagtattgacggaggttgcagagaagaggctgcaggcgattaaagaattcact
gaactcggttccgggtttaaaattgccatgcgcgatttatccatcaggggcgccggcaac
ttactaggagcgcagcagcatggctttattgactctgtcggctttgatttatattcacaa
atgctgaaagaggcgattgaggagcgtaaagctgaacttggcgacccgcatgcagaagtc
aaaacaacagttgaaattgatctggaaattgacgcttatattccagattcttatattaag
gatgggcaccaaaaaattgaaatgtataagcgctttagagggatcgaagtattagaggat
gtggaggaacttcaagcggaaatgttagaccgctttggcgagtatcctgatgaggtctcc
tatttattccatattgccgaaatgaaggtgctggcgattcaaaatggtgttgaatccatc
aaacagttaaagcaggacgtaaccattctcctgacagaagaggttaccaatacaatggat
ggaagcaagctgttccatattggcagccaatttggcagatcggtgactcctggaatggag
ggcaaaaagctgaaaatagtcgtgaatacaaaaggctatcagacagcgcagtggctccat
atcgtatttgaaatggtcaaaggcattattttagccaaaaagggacaggaaaatccggtt
taa
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