Nakamurella multipartita: Namu_3342
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Entry
Namu_3342 CDS
T00991
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nml
Nakamurella multipartita
Pathway
nml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Namu_3342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nml03019
]
Namu_3342
03009 Ribosome biogenesis [BR:
nml03009
]
Namu_3342
Enzymes [BR:
nml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Namu_3342
Messenger RNA biogenesis [BR:
nml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Namu_3342
Ribosome biogenesis [BR:
nml03009
]
Prokaryotic type
rRNA helicases
Namu_3342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACV79670
UniProt:
C8XDW7
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All DBs
Position
3678564..3680387
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AA seq
607 aa
AA seq
DB search
MTMQAALLSDTPDSESIQETAPVPTGPGFDELGLPGTLLRAVKDLGFATPTAIQAAAIPA
LLAGRDITGVAQTGTGKTAAFGLPLLAAIDPTPGVQALVLCPTRELAVQVADAISSFATA
LPDVSVIAIYGGTGFLPQRAALRAGAQVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADE
MLRMGFAEDVDRILSDAPNSRQAALFSATMPPAIRSIAAKHMTNPVDIAVSRQSSTVDSV
RQIYAVVPFRDKVDALTRFLQVTEGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVP
QKEREKIIERLRDGRLDVLVATDVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAG
RTGTALTFFTPREMGRLRAIERATRGTLEQIVPPSPDEVTAHKAAMVLRKALTRLDVGRL
GRQNRLIRDLLAESEITAEELAAALLALAAGDDGVERTPAVEPASFEKDRKTKVRSAAGD
RPGRAARPPFGRRYRVAVGHRDGVRPAGIVGAIAGEGGVSGKDLGRIEIFDTFSTVEIAA
ELSPAALGRIANAKVSGRTLRIEPDREDAAGRRPWAGQRDSHGPRRDGQGFEHGHDHRPV
RAGRGGR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgcaggctgccctcctttccgatacccctgattctgaatcgatccaggagacc
gctccggtacccaccgggcccggtttcgacgagctgggtctgcccggcacgctgctgcgc
gccgtcaaggacctgggcttcgccacccccaccgcaatccaggcggcggccatcccggcg
ctgctcgccggccgggacatcaccggtgtcgcgcagaccggcaccggcaagacggccgcc
ttcggcctgccgctgctggccgcgatcgatccgacccccggcgtgcaggccctggtcctg
tgcccgacgcgtgagctcgccgtccaggtggccgacgccatctcctcgttcgcgaccgcg
ctgcccgacgtgtcggtgatcgccatctacggcggcaccggcttcctgccccagcgggcc
gcgctgcgggccggcgcccaggtcgtcgtcggcactcccggacggatcatcgaccacctc
gagcggggcaccctggacctgtccgggctgcgcttcctggtgctcgacgaggccgacgag
atgctgcggatgggcttcgccgaggacgtggatcgcatcctgtccgacgccccgaactcc
cgtcaggccgccttgttctcggccaccatgccgccggcgatccggtcgatcgcggccaag
cacatgaccaacccggtggatatcgccgtgagccggcagtcctcgactgtcgactcggtc
cggcagatctacgcggtcgtgccgttccgcgacaaggtcgacgcgctgacccgcttcctg
caggtcaccgagggcgatgcggcgatcgtgttcgtccgcaccaaggaggcctgcgaccag
gtcggcaccgacctgctcgcccgcggcgtctcggccgcggtgatgaacggcgacgtcccg
cagaaggagcgcgagaagatcatcgagcggctccgcgacgggcgcctggacgtgctggtg
gccaccgacgtcgccgcccgcggcctggatgtcgaccggatcgacctggtggtcaacttc
gacgcccccggcgagccggaggcctacgtccaccgcatcggccgcaccggccgggccggc
cgcaccggtaccgcgctgacgttcttcacccctcgggagatgggccggctgcgggccatc
gaacgggccacccgcggcaccctggagcagatcgtcccgcccagcccggacgaggtgacc
gcgcacaaggcggccatggtgctgcgcaaggctctgacccgtctggacgtgggccggttg
ggccggcagaaccggctgatccgcgacctgctcgcggagtccgagatcaccgccgaggaa
ctggccgccgcgctgctggcgctggccgccggcgacgacggcgtcgagcggaccccggcc
gtggagccggcgtcgttcgagaaggaccgcaagaccaaggtgcgctcagccgccggtgac
cggcccggccgcgcggcccgcccgccgttcggtcggcgctaccgcgtcgccgtcggtcat
cgggacggggtgcgcccggccggcatcgtcggcgccatcgccggcgagggtggggtcagc
ggcaaggatctgggccgcatcgagatcttcgacaccttctccacggtcgagatcgccgcg
gagctgtccccggccgcgctcggccggatcgccaacgccaaggtcagcggccgcaccctg
cggatcgagcccgaccgcgaggacgcggccggtcgccggccctgggccggacagcgcgat
tcgcacggtccgcgccgggacggccagggcttcgagcacggccacgatcaccgtccggtc
cgggccggacgcggcggtcgctaa
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