Nakamurella multipartita: Namu_4220
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Entry
Namu_4220 CDS
T00991
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
Organism
nml
Nakamurella multipartita
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF11
Sigma70_r2
CARDB
zf-HC2
Sigma70_r4_2
NPCBM_assoc
Sigma70_r4
Sigma70_ECF
Motif
Other DBs
NCBI-ProteinID:
ACV80509
UniProt:
C8XIP4
LinkDB
All DBs
Position
4665588..4672580
Genome browser
AA seq
2330 aa
AA seq
DB search
MPEQEADEYVVSDPELITQVRNGDREAFGELYRRHSGPATNLARQFARNAAEADDLVSES
FARVLDNLLDGKGPDTAFRAYLFTTIRNTAYDRTRKDKRLQFTDDMTAHDVAVPGDDPAL
MKMESGLVASAFAQLPERWQAVLWHTQVEGESPAQVGALLGMAPGAVSSLAFRAREGLRE
AYLQAHLAETAAEQCRSTVERLGAWTRGGLSKRETQQVDAHLKTCDRCRALAAELQEVNH
NLRGLLAPLLLGGAAAAGYLATLGPVAPLAVPGALAGGATGGSAGSAGSGGGAGAAGAGA
AGGAGAAGGASAAGIAAAAAAAAAGAAALGLGALASAADSNAAAASSTGGAGAGGAGAGA
GGAGAGAAGAGAAGAGAAAGAGGAATGLVATIGVGGLIAAGAVVAAAVLAAVVLIVNGLT
PATTTPVADQPPSVAAPATSGGADGAAGPTGSDSAGGTGSPAGSVAQGGDTTAGGANGSS
AGASDAGSGSNPGAGTDSGAGGDQGGAGTGTGGNQGGGGDQGTGGSSPLSTSAVTNPAET
NPAGTNPAPTTQVPTTAEPTSPGPTSATTEPTTTEPTTSEPTTPVPPTDPNLTVSGPAGV
SITAGASAGIDLTVLNNEGTSVSPTLTVQLPSGVSVTGFSQTPTAPGLRGARAGLLRAGT
CEPLASGCRAQLDPIGPGESTAVTITLSADRASTGGEVTITGWSGPSITVPVTVTSAVKL
VGSADGPLTADGGIHTVRVTEESNGSPEPVTFSSSQLRFAGTPTCSVTAERADSVICTPG
ANGTFDLAVLIDRDQPEGELGSVLQVTDAHQRPVELTAAEGTSLTIVKPAPADLQLNPQV
RVDPPVSGGSGRVSFTVHNEGGTASADGTTLDLAFTGGLVLTTSAPEGVTCTATGCTLPS
IEPGADLEITLSISAAPTATGGEVLVRWAGQEGGLSIGVPVGPAITALVAQKVDLVADGT
SQPVVLRADLAQPGIDPGPITVSTGTDLVSVSCGEPDATAARTAACSLSSDGAVTIQVTV
PTGVVAGPFALTATDAAGRRIDPVDVSAVRIVRPAALVLGEAGVIQPPFAGGSGAFSVTV
TNAGDLASAAGQAIEVDLPDGLTLTGTTVVGGQCAGQPPAALAIAAPSVLVTADCRLPAI
DPGQSVTLAVTVHADPASTGDTSTVSLPGQGPGVPVDLTVQSGIATLTVEATTPLVADGA
TYPLTISAAPADPSVTDLGSITVDTGSDELTMACGGPAARQVTCAFTGPTLPVTLTVART
AAPGPLTLTAVDLAQRPIRTDVGSLAIKTPAALSLSPLTVTSPLVAGGTGAVTVTVSNTG
DVDGTIGPVTLVAPEGLAIAGVTPQDCARSCTVPAQGSTTVDVALTVDASLPASVPLQLD
LGPLTTPAGSVDVAAGIEQVEISSAGQPADPLIADGQEATRSVAVISSLTTPGPVTLTAP
KGVTLAACGKAGASVTCLAPFDLGITVPIGYAPGSLALSAVDAGQRPLKVTELTVAAPAA
LTLDVPESATALAGGPGTLTVTVTNRGGSPSAGQESLTADLPEGFTLTGSTCDEPAAAAL
AVAVPTAAADPCALPVLAVDEKVAVTFSFTAPPQAGPTQSIDVRLDGQEPVTVPLTVGAG
ITRLAADPDLALPANDTAQPVTLVATPAADGLILGSVTLSSAEKDVQVTCASDCRVGPDR
TVAVIITVASTHASEPLRLLAQDAGGRPIEVDPIAVLGAPQVSLTGPTVVRSPIAGGQGQ
FSLTVTNRGESPLPAGQPIGITAPGFTVVSVEGAGVGQCDKTGCRLPQLDAASSITITIT
LAAPADTKPGTYQLTADLLDRSYPVDFTVGQAITGLVATPGGPLTAGTTTTLSIAATLAG
EPTDPIAVTLTSTSPLVTLSGCKGNGSSMTCTGQSFTVAVTIDAKQPAGPLPVTATDAAG
NAVALTDGAAPLQVVAPATTLALSELTIIRDGSAITTLSLRVTNPTTATIPARSIALTYP
SPPVVGHLVEIVGPGRIPVYCVTSCAVPSLKAGQHSDLTIYLLLPRPTTDPVTVSVTIDG
ITRTATVIDQVDGLTRTDQPAGPATPDAATDGAAPSTDPTPTPSSEPTPVPAESTGPAES
TSAAPATDGPSTDGPSTDGPSTDRPTRSSTETGATDGPTGERPTTASPTTASSTSESPTT
ASTTAESPADTGTSTPEPAPAHLSLGTPAVLDPLTAGGSGRLTLTVRNTGDGPSTEQAVR
MSLPDGVNATAVTVDGAPAGGGLRCTVPALEPGAAVTVVITLAVDADAQTGPARFDVDDD
SATVELTVERPTPPPNPEPAPTASSNPAVRPDDAATDPASATTSPLPTGP
NT seq
6993 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagcaggaagctgacgagtacgtggtcagcgaccccgaactgatcacccaggtc
cgcaacggcgatcgcgaggccttcggcgagctgtaccggcggcactcgggaccggccacc
aacttggcgcgccagttcgcccgcaacgccgccgaggccgacgacctggtctccgaatcc
ttcgcccgcgtgctggacaacctgctggacggcaagggccccgacaccgcattccgcgcc
tacctgttcaccaccatccgcaacaccgcctacgaccgcacccgcaaggacaagcggctg
cagttcaccgacgacatgaccgcccatgacgtggccgtgcccggtgacgatccggcgctg
atgaagatggagagcgggctggtcgccagcgcgttcgctcagctgccggaacgctggcag
gccgtgctgtggcacacccaggtcgagggcgaatcgcccgcccaggtcggagcgctgctc
gggatggccccgggggcggtgtcctcgctcgccttccgggcccgggagggcctgcgcgag
gcctatctccaggcccatctggccgagaccgcggccgagcagtgccgctcgacggtggaa
cggctcggcgcctggacccgcggcggcctgtccaagcgggagacccagcaggtcgacgcg
cacctcaagacgtgcgaccgctgtcgcgcgctggccgcggagctgcaggaggtcaaccac
aacctgcgcggcctgctcgccccgctgttgctcggcggcgcggcggccgcgggctacctg
gcgaccctcggaccggtggcaccgctggcggtgccgggggcgctggccggtggcgcgacc
ggcggctcggcgggctcggcgggcagcggcggtggcgcgggagccgccggggccggtgcg
gccggcggcgccggagcggccggaggggccagtgcggccgggatcgcagcggcggccgcc
gctgcggcggcgggtgctgccgccctgggacttggcgcattggccagcgccgccgattcg
aacgcggcggccgcgtcctccaccggtggtgcaggggctggtggtgctggtgccggcgct
ggcggagcaggggccggcgcggcgggcgcgggggccgcaggcgccggtgcagcggcgggc
gccggcggtgcggccaccggactggtcgcgaccatcggggtcggtgggctgatcgcggcc
ggcgcggtggtggccgccgccgtcctcgcggcggtcgtgctgatcgtgaacggcttgact
ccggcgaccaccacacccgtggccgatcaaccgccgtctgtggccgccccggccacctcc
ggcggcgccgacggcgccgccggcccgaccgggtcggactccgccggcggcaccggtagc
ccggcgggttcggtcgcacagggcggcgacaccaccgccggcggggccaatggctcgtcg
gccggcgcgtccgacgccggttccggcagcaacccgggcgccgggaccgactcgggcgcg
ggcggagatcagggtggggccggcacgggcaccggcggaaatcagggtgggggtggcgat
cagggcaccggcgggtcctcaccgctgtccacctcggcagtgaccaacccggcagagacc
aacccggcagggaccaacccggcaccgaccacgcaggtgccgaccacggccgagccgacg
tccccggggccgacctcggcgaccaccgaaccgacgaccaccgaacccaccacctccgaa
cccacaaccccagtgccccccaccgacccgaacctgaccgtctcgggtcctgccggtgtg
tcgatcaccgccggtgcatcggccggtatcgacctcacggtcctgaacaacgagggcacc
agcgtctccccgaccctcaccgtgcagctcccgtccggcgtgagcgtcaccggcttcagc
cagaccccgactgctcccggattgcgcggcgctcgcgccgggttgctgcgcgccgggacg
tgcgagccgctcgcctccggctgccgcgcccagctcgacccgatcggacccggggaatcg
accgcggtcaccatcacgctgagcgccgaccgggcatccaccggcggcgaggtgaccatc
accggctggtccggcccgtcgatcaccgtgccggtcaccgtgacgtccgcggtgaagctg
gtcgggagcgccgacggcccattaaccgccgacggcggtatccacacggtcagggtgacc
gaggagagcaacggctccccggagccggtcaccttcagcagcagccagctgcgcttcgcc
ggcacacccacctgttcggtgaccgcggagcgggccgattcggtgatctgcacgccgggc
gcgaacggcaccttcgacctggccgtgctgatcgaccgtgatcagccggagggcgaactc
ggttcggtgctgcaggtgaccgatgcccaccaacggccggtcgagctgaccgccgccgag
gggacgtcgctcacgatcgtcaagccggcgccggccgacctgcagctcaatccgcaggtc
cgcgtcgacccacctgtgtccggcggctccggccgcgtctcgttcacggtgcacaacgag
ggcggcaccgcgtcggcggacggcaccacgctcgacctcgcgttcaccggcggcctggtg
ctgaccaccagtgcccccgagggcgtgacctgcacggccaccggctgcacgctgccgtcg
atcgaaccgggagccgacctggagatcaccctgtcgatctcggccgcccccaccgcgacc
ggtggcgaggtcctggtccggtgggccggccaggagggcggtctgagcatcggtgtgccg
gtcggtcccgccatcacggccctagtcgcgcagaaggtcgacctggtcgccgacggcacc
agccaaccggtagttctgcgggccgacctggcgcagcccggcatcgatcccgggcccatc
acagtgagcaccggcaccgacctggtctcggtcagctgcggcgagccggacgcgaccgcg
gccaggacggcggcctgctcgctcagctcggacggcgccgtgacgatccaggtgacggtg
cccacgggcgtcgtcgctggtcccttcgccctgaccgcgaccgacgcggccggccggcgg
atcgacccggtcgacgtcagcgccgtccggattgtccggccggccgcgttggtgctgggc
gaggccggcgtgatccagccgccgttcgccggcgggtcgggcgcgttctcggtcacggtc
acgaacgccggcgacctcgcctcggccgccggccaggccatcgaggtcgacctgccggac
gggctgacgctgaccgggaccaccgtcgtcggtggccaatgcgccggtcagccgccggcc
gccctggcgatcgcggccccgtcggtgctggtcaccgccgactgccggttgccggccatc
gaccccgggcagtcggtcacgctcgcggtcacggtccacgccgacccggcgtcgaccggc
gacaccagcaccgtcagcctgcccggccagggaccgggcgtcccggtggacctcaccgtg
cagtccggcatcgccacgctgacggtcgaggcgacgacgcccctggtcgccgacggagcc
acctacccgctgaccatctcggccgctcccgccgacccctcggtcaccgatctcggatcg
atcaccgtggacaccggatccgatgagctcaccatggcctgtggcggaccggcggcccgg
caggtcacctgtgcgttcaccggccccacgctgccggtcaccctgacggtcgcccggacc
gctgcgcccggaccgctgacgctgaccgccgtcgacctggcgcagcgaccgatccggacc
gacgtcggctcgctggcgatcaagaccccggccgccctgagcctgtcgccgctgaccgtg
acgtcgccgttggtggccggcggcacgggcgccgtcaccgtcaccgtcagcaacaccggt
gacgtcgacgggacgatcgggccggtcaccctggtggcccccgagggcctcgcgatcgcc
ggcgtcaccccgcaggactgcgcgcgctcgtgcaccgtgccggcccagggctcgaccacc
gtcgacgtcgcgctgaccgttgacgcctcgctgcccgcgtcggtcccgctgcaactggac
ctcggcccgctgaccaccccggccggttccgtcgacgtggccgccgggatcgagcaggtc
gagatctcctccgccggccaaccggcggacccgctgatcgccgacggccaggaggccacc
cgcagcgtcgccgtgatcagttcgctgaccaccccggggccggtcaccctgaccgcgccg
aagggcgtcacgctggccgcctgcgggaaggcgggcgcctccgtcacctgcctcgcaccc
ttcgacctgggcatcacggtgcccatcggatacgcgccgggctcattggccctgtccgcc
gtcgacgccggacagcgccccctgaaggtcaccgaactgacggtggctgccccggccgcc
ctgaccctggacgtcccggagagcgccaccgcgctcgccggtggccccggcaccctcacc
gtcacggtgaccaaccggggcggcagcccatcggccggccaggaatccctgaccgcggac
ctgcccgaaggcttcaccctgaccggctccacgtgcgacgagccggccgcagcggcgctg
gcggtcgccgtacccaccgcggcggccgacccgtgtgcgcttccggtactcgcggtggac
gagaaggtggccgtcaccttctccttcaccgccccgccccaggccgggccgacgcagagc
atcgacgtgcggctggacggtcaggaaccggtcaccgttccgctgaccgtgggcgccggc
atcacccggctggccgccgatccggatctcgccctgccggccaacgacaccgcccagccg
gtcacgttggtcgcgacgcccgccgccgacggcctgatcctgggctcggtcacgctgagc
tcggctgagaaggacgtgcaggtgacctgcgcgagcgactgccgggtcggacctgaccgg
acggtcgccgtcatcatcacggtggcctcgacgcacgcctcggagccgctgcgtctgctc
gcccaggacgccggcggtcggccgatcgaggtcgatccgatcgctgtgctcggcgcccca
caggtgagcctgaccggtccgacggtggtccggtcgccgatcgccggcggccagggtcag
ttcagcctgaccgtcaccaaccggggcgagtccccgttgcccgccggtcagccgatcggg
atcaccgcgcccggcttcaccgtcgtctcggtggagggcgccggggtcggccagtgcgac
aagaccggctgccgattgccgcagcttgacgcggcatcgtccatcaccatcaccatcacc
ctcgcggccccggcggacaccaagcccggcacctaccagctcacggccgatctgctcgac
cgctcctacccggtcgacttcaccgtcggtcaggccatcaccggactggtcgccaccccg
ggcggcccgctgaccgccggcaccacgaccacactctcgatcgccgccaccctggccggc
gagccgaccgacccgatcgcagtcaccctgacctcgaccagcccgctggtcacgctcagc
gggtgcaagggcaacgggtcgagcatgacgtgcaccggccagtcgttcaccgtggcggtg
acgatcgacgcgaagcagccggccgggcccctcccggtgaccgcgaccgacgccgccggc
aacgcggtggcgctcaccgacggggccgcgccgctgcaggtcgtggccccggcgaccacg
ctggcgctgtccgagctgacgatcatccgcgacggcagcgcgatcaccacgctcagcctt
cgcgtcaccaatcccaccacggcgacgatcccggcgcggtcgatcgccctgacctacccg
agcccgccggtggtgggccacctggtcgagatcgtcggtcccggccggatcccggtctac
tgcgtgacgtcctgcgcggtgccctcgctcaaggccgggcaacacagcgacctgacgatc
tacttgctgctcccccgccccaccaccgacccggtcaccgtctcggtcacgatcgacggc
atcacccggacggccacggtgatcgaccaggtcgacggcctgacccgcaccgatcagccg
gccggccccgccacgcccgacgcggccacggacggcgccgcgccctcgaccgatccgacc
ccgaccccgagctctgagccgaccccggtaccggccgagtccaccgggccggccgaatcc
acgagtgccgcccccgccaccgacgggccctccaccgacgggccctccaccgacgggcct
tccaccgaccgaccgactcgctcctccaccgagaccggtgcgaccgacggccccaccggt
gagcgcccgaccaccgccagccccaccactgcgagctccaccagcgaaagcccgaccacc
gcgagcaccaccgcggagtcgccggcggacaccggtacgagcacgcccgagccggcgccg
gcgcacctctcgctcggaacgcccgccgtcctggacccgctcaccgcaggcgggagcggg
cggctgaccctgaccgtgcgcaacaccggtgacgggccctcgaccgagcaggcggtccgg
atgagcctgcccgacggggtgaacgcgacggcggtcacggtggacggcgccccggccggc
ggcgggctgcggtgcaccgtccccgcgctcgagcccggagccgcggtgaccgtcgtgatc
accctcgccgtcgacgctgatgcgcagaccgggccggctcgcttcgacgtggacgacgac
tccgcgaccgtcgagctgaccgtcgagcgccccaccccgcccccgaatcccgaaccggcg
cccaccgcatcgtccaacccggcggtccgcccggacgatgcggcgacggacccggcgtcc
gcgacgaccagcccgctcccgaccggcccgtga
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