Nakamurella multipartita: Namu_4525
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Entry
Namu_4525 CDS
T00991
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nml
Nakamurella multipartita
Pathway
nml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Namu_4525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nml03400
]
Namu_4525
Enzymes [BR:
nml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Namu_4525
DNA repair and recombination proteins [BR:
nml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Namu_4525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ACV80804
UniProt:
C8X6Q6
LinkDB
All DBs
Position
complement(5028050..5031628)
Genome browser
AA seq
1192 aa
AA seq
DB search
MSSGSLRGLLAAVSADPFFAAMNEATGSITHRVTGPPAIRPFVVGTLAAGYPDAGVPVLL
VTATGREAEAAVASIGDLIGDDRVALFPSWETLPHERLSPRADTVGRRLATLRRLAHPEE
HPGGYPAVVVATIRSMIQPMAPHLGEMAPVTLRVGQEVDLTELVDRLVSLAYGRVDMVEK
RGEIAVRGGILDIFPPTADHPIRVEFWGDEISDLRTFGVTDQRSLGAVEQVVAPPCREIL
LTAEVRERAAQLSAQQTGDPTLAQMLDNLANGITVEGMESLIPVLVGDDLELLPNLVRPG
THVVLADPERIRTRAADLVRTGEEFLAASWMAAATGGRAPIDLGSSAYRSLAEVLDVVRD
AELPIWRVASFESGEALQESDSPAVLGAPAYRGELASAIHDARERQAAGGSTVVVVAGAG
TAARAGERLAEADMGVVVAEQLTEPPRSDVVTVTCGRLEHGFVLRESGLAVLTEADLTGS
TGVNPEAAAARLPARRRNAVDPLALKPGDYVVHSQHGIGKYVDMVQRTSGGATREYLVVE
YAPSKRNQPGDRLFVPTDALDQLSRYVGGEVPTLNKLGGADWAKTKGRARKAVRQIAAKL
VQVYAARASAPGHAFAPDTPWQRELEDAFPYTETHDQLAAIDEVKADMERAVPMDRVISG
DVGYGKTEIAVRAAFKAVQDGKQVVILVPTTLLAQQHLSTFSERMSAFPVTVRGLSRFTS
NEQAAQTVKGLADGSVDIVIGTHRLLQPSIRYKDLGLVVVDEEQRFGVEHKEHITALRAH
VDMLTMSATPIPRTLEMSLAGIREMSTIATPPEERHPILTYVGAYDEKLVAAAIRRELLR
EGQVFYVHNRVADIESVARRLREAVPEARIAVAHGQMNEDRLEKIIDGFWAREWDVLLCT
TIVETGLDISNANTLIVDHAEVLGLSQMHQLRGRVGRGRERGYAYFLYPGEKPLTETAHD
RLATIAQNSDLGAGMAVAMKDLEIRGAGSILGAEQSGHIAGVGFDLYVRLVGEAVTAFKK
AAAAAGEELQEEPVEVRVDLPIDANVPHEYIPAERLRLDAYRRIAGVASKEEVAAVRDEL
TDRYGPIPEQVENLLAVAEFRQVCRSVGVTEVTLGPPGLRIAPIVLPESGQLRMARLYPG
SKYRAAASVLTLKPPTAGGRIGAAALRDRELLTYLGRVLEDIAPVPAGASAR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcgggttccctgcgtggtctgctggcggcggtatcggcggaccctttcttcgcc
gcgatgaacgaagccacggggtcgatcacccatcgggtgacgggtccccccgccattcgt
ccgttcgtggtggggaccctggccgccggctacccggacgccggcgtgccggtgttgctg
gtgaccgcgaccggccgggaggctgaagccgcggtcgcctcgatcggtgacctgatcggc
gacgaccgggtggccctgttcccgtcgtgggagaccctgccgcacgagcggctctcgccc
cgcgcggacaccgtcggccgccggctggccaccctgcgccgtcttgcgcacccggaggaa
cacccgggcggttaccccgcggtggtggtggccacgatccggtcgatgatccagccaatg
gctccgcatctgggcgagatggcgccggtgaccctgcgggtgggccaggaagttgacctg
accgagctggtcgaccggctggtctcgctggcctacggccgggtcgacatggtcgagaag
cgtggcgaaatcgcggtccgcggcggcattctggacatcttcccgcccaccgccgaccat
ccgatacgggtcgagttctggggtgacgagatttccgatttgcgcactttcggggtcacc
gaccagcggtccctgggtgcggtcgagcaggtcgtggccccgccctgccgggagatcctg
ctgacggccgaggtgcgggagcgcgccgcgcagctgtccgcccagcagaccggcgatccg
accctggcccagatgctggacaacctggccaacggcatcaccgtggaggggatggaatcg
ctcatcccggtactggtcggggacgatctcgagctgctgcccaacctggtccggcccggc
acgcacgtggtgctggccgatccggagcgcatccggacccgggccgcggacctggtccgg
accggggaggagtttttggccgcatcctggatggcggcggccaccggcggccgggcgccg
atcgacctcgggtcgtcggcttaccggtcgctggccgaggttctcgacgtcgttcgggac
gccgagctgccgatctggcgggtggcctccttcgagtccggggaggcgctgcaggagtcg
gacagcccggccgtgctgggcgcacccgcctatcggggcgagctggcgtccgcgatccac
gacgcccgggagcggcaggccgcaggcggatcgaccgtggtggtggtggccggggccggc
accgccgcccgggcaggggagcggctggccgaggccgacatgggcgtcgtggtggccgag
cagctgaccgaaccgccgcgcagtgacgtcgtcaccgtgacctgcgggcgcctcgagcac
gggttcgtactgcgcgaatcgggcctggccgtgctgaccgaggccgatctgaccggctcg
acgggcgtgaatccggaggccgcggcggcccggctcccggcgcgtcggcgcaacgcggtc
gacccgctcgcgctcaaacccggcgactacgtcgtgcattcgcagcacggcatcggcaag
tacgtcgacatggtgcagcgcacttcgggcggcgccacccgtgagtacctggtcgtcgag
tacgccccgagcaagcgcaaccagcccggcgaccggctgttcgtgcccaccgacgccctg
gaccagctctcccgctatgtcgggggcgaggtgccgacgctgaacaagctgggtggtgcc
gactgggccaagaccaagggccgggcccgtaaggccgtccggcagatcgcggccaagctg
gtccaggtgtacgcggcgcgggcctccgcacctgggcacgcgtttgcgccggacaccccg
tggcagcgcgagctcgaggacgcctttccctacaccgagacgcatgatcagctcgcggcg
atcgacgaggtcaaggcggacatggagcgggcggtgccgatggaccgggtgatctccggc
gacgtggggtacggcaagacggagatcgcggtgcgggcggcgttcaaggcggtgcaggac
ggcaagcaggtggtgatcctggtgccgacgacgctgctcgcgcagcagcatctgtccacc
ttctcggagcggatgtcggcgttcccggtgacggtgcgtgggttgtcgcggttcacgtcc
aacgagcaggcggcgcagaccgtcaaggggttggccgacgggtcggtggacatcgtcatc
ggcacccaccggctgctgcagccgtcgatccgctacaaggaccttggtctggtggtggtg
gacgaggagcagcggttcggcgtggagcacaaggagcacatcaccgcgttgcgggcgcac
gtggacatgctgacgatgtcggcgacgccgattccgcggacgttggagatgagcctggcc
gggatccgggagatgtcgacgatcgcgacgccgccggaggagcggcatccgatcctgacg
tatgtcggcgcgtatgacgagaagctggtggcggcggcgatccggcgggagttgctgcgc
gagggtcaggtgttctacgtgcacaaccgggtcgccgacatcgagtcggtggcccgccgg
ctccgggaagcggtgccggaggcgcggatcgcggtggcgcacgggcagatgaacgaggac
cggttggagaagatcatcgatgggttctgggcccgcgaatgggacgtgctgctgtgcacg
accatcgtggagaccggcctggacatttcgaacgcgaacacgttgatcgtggatcacgcg
gaggtgctgggcctgtcgcagatgcaccagctccggggccgggtgggccggggtcgggag
cgcgggtacgcgtacttcctgtatccgggggagaagccgttgaccgagacagcgcacgac
cggctggccacgatcgcgcagaactcggatctgggggcggggatggcggtggcgatgaag
gatctggagatccgcggggccgggtcgatcctgggtgccgagcagagcgggcacatcgcc
ggggtggggttcgatctgtatgtgcggctggtcggggaggcggtgacggcgttcaagaag
gccgccgcggccgccggtgaggagttgcaggaggagccggtcgaggtgcgggtcgacctg
ccgatcgacgccaacgtgccgcacgagtacatcccggccgagcggctgcggctggacgcg
taccggcggatcgccggggtggcgtcgaaggaggaggtggcggcggtgcgggacgagctg
acggaccggtacgggccgatccccgaacaggtggagaacctgctcgcggtggccgagttc
cggcaggtgtgccggtcggtgggggtgaccgaggtgacgttggggccgccggggctgcgg
atcgcgccgatcgtgttgcccgagtcggggcagctgcggatggcccggctgtacccgggg
tccaagtaccgggcggcggcgtcggtgctgacgctgaagccgcccaccgcgggcggccgg
atcggggcggcggcgctgcgggatcgggagctgctgacgtacctgggccgggtgctcgag
gacatcgcgccggtgcctgcgggtgcgtcagcgcgctga
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